Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00037.1.g03230.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00037.1)

BLAST

TAIR10	AT1G51680.3		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	734	125	515	e-142	73.4	33	41
		Subject	539	19	418
		Annot	\| Symbols: 4CL1, 4CL.1, AT4CL1 \| 4-coumarate:CoA ligase 1 \| chr1:19159080-19161464 REVERSE LENGTH=539
NR	ref\|XP_002451647.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	734	127	734	0.0	75.6	65.8	68.9
		Subject	555	23	555
		Annot	hypothetical protein SORBIDRAFT_04g005210 [Sorghum bicolor] gi\|241931478\|gb\|EES04623.1\| hypothetical protein SORBIDRAFT_04g005210 [Sorghum bicolor]
IRGSP	Os06t0656500-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	734	129	733	0.0	76.2	59.3	65.5
		Subject	559	17	549
		Annot
Sbicolor	Sobic.004G062500.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	734	127	734	0.0	75.6	65.8	68.9
		Subject	555	23	555
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000873	AMP-dependent synthetase/ligase
Zjn_sc00037.1.g03230.1.am.mkhc				length: 734 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
HMMPfam	PF00501	AMP-binding	7.7e-12	156-516 591-635
IPR020845	AMP-binding, conserved site
PatternScan	PS00455	AMP_BINDING	NA	304-315
IPR025110	AMP-binding enzyme C-terminal domain
HMMPfam	PF13193	AMP-binding_C	4e-14	644-719
no_ID
Gene3D	G3DSA:2.30.38.10	no description	1.6e-24	590-626
Gene3D	G3DSA:3.30.300.30	no description	3.4e-30	632-729
Gene3D	G3DSA:3.40.50.980	no description	2.3e-44	155-309 310-464
HMMPanther	PTHR24096	FAMILY	1.7e-246	122-730
HMMPanther	PTHR24096:SF16	SUBFAMILY	1.7e-246	122-730
Seg	seg	seg	NA	38-56 179-190 209-226 280-295
superfamily	SSF56801	Acetyl-CoA	1.5e-53	124-516 592-732

Pseudomolecule

Chromosome	Start	End	Strand
8	-68027	-63300	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00037.1	maker	exon	1569410	1569793	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:8
Zjn_sc00037.1	maker	exon	1569911	1570013	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:7
Zjn_sc00037.1	maker	exon	1570108	1570321	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:6
Zjn_sc00037.1	maker	exon	1571173	1571397	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:5
Zjn_sc00037.1	maker	exon	1571953	1572151	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:4
Zjn_sc00037.1	maker	exon	1572250	1572603	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:3
Zjn_sc00037.1	maker	exon	1573121	1573813	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:2
Zjn_sc00037.1	maker	exon	1573838	1574137	.	-	.	ID=Zjn_sc00037.1.g03230.1.am.mkhc:exon:1