Z. japonica Nagirizaki
Zjn_sc00037.1.g02070.1.cf.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G11950.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 354 10 348 5e-72 161.6 39.5 59
Subject 572 16 349
Annot | Symbols: | TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572
NR ref|XP_004953039.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 354 5 354 e-156 99.2 74 85.6
Subject 351 1 350
Annot PREDICTED: uncharacterized protein LOC101765307 isoform X1 [Setaria italica] gi|835904179|ref|XP_012700156.1| PREDICTED: uncharacterized protein LOC101765307 isoform X1 [Setaria italica]
IRGSP Os02t0605500-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 354 1 352 e-145 100.3 69.2 81.9
Subject 355 1 352
Annot
Sbicolor Sobic.004G209000.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 354 5 354 e-153 99.2 72.3 83.1
Subject 351 1 350
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00037.1.g02070.1.cf.mkhc length: 354 aa.
IPR001293 Zinc finger, TRAF-type
method AccNumber shortName E-value location
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50145 ZF_TRAF 11.800 209-260
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 0.015 159-221
224-267
no_ID  
Coil coil coiled-coil NA 315-350
HMMPanther PTHR10131 TNF 4.9e-32 160-336
HMMPfam PF02176 zf-TRAF 4.1e-11 209-267
Pseudomolecule
Chromosome Start End Strand
71362946113631722+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00037.1 maker exon 1116311 1116951 . - . ID=Zjn_sc00037.1.g02070.1.cf.mkhc:exon:2
Zjn_sc00037.1 maker exon 1117586 1118572 . - . ID=Zjn_sc00037.1.g02070.1.cf.mkhc:exon:1

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