Z. japonica Nagirizaki
Zjn_sc00037.1.g01910.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G02380.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 37 252 1e-23 137.7 35.7 46.4
Subject 347 102 347
Annot | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487438-488624 REVERSE LENGTH=347
NR ref|XP_006648828.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 49 252 3e-70 93.7 61.9 68.7
Subject 236 34 236
Annot PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Oryza brachyantha]
IRGSP Os02t0610500-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 32 252 8e-67 131.7 62.7 69.8
Subject 332 123 332
Annot
Sbicolor Sobic.004G211200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 252 32 252 3e-73 133.3 65.9 71.4
Subject 336 117 335
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00037.1.g01910.1.sm.mk length: 252 aa.
IPR010402 CCT domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 4.8e-20 174-216
ProfileScan PS51017 CCT 16.916 174-216
no_ID  
HMMPanther PTHR31319 FAMILY 7.6e-65 32-252
Seg seg seg NA 33-47
78-95
134-149
152-169
217-243
Pseudomolecule
Chromosome Start End Strand
71371373113715914+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00037.1 maker_non_over exon 1032119 1032457 . - . ID=Zjn_sc00037.1.g01910.1.sm.mk:exon:3
Zjn_sc00037.1 maker_non_over exon 1032567 1032895 . - . ID=Zjn_sc00037.1.g01910.1.sm.mk:exon:2
Zjn_sc00037.1 maker_non_over exon 1034212 1034302 . - . ID=Zjn_sc00037.1.g01910.1.sm.mk:exon:1

Top