Z. japonica Nagirizaki
Zjn_sc00037.1.g01820.1.cf.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G25570.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
397 |
13 |
357 |
e-100 |
87.9 |
48.9 |
60.5 |
| Subject |
349 |
4 |
346 |
|
| Annot |
| Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349 |
| NR |
gb|ADC45379.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
397 |
1 |
396 |
0.0 |
100 |
89.7 |
94.2 |
| Subject |
397 |
1 |
396 |
|
| Annot |
S-adenosylmethionine decarboxylase [Cleistogenes songorica] |
| IRGSP |
Os02t0611200-02_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
397 |
1 |
396 |
0.0 |
99.5 |
80.4 |
88.2 |
| Subject |
395 |
1 |
393 |
|
| Annot |
|
| Sbicolor |
Sobic.004G211900.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
397 |
13 |
397 |
0.0 |
100.3 |
81.1 |
87.9 |
| Subject |
398 |
15 |
398 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00037.1.g01820.1.cf.mkhc |
length: 397 aa. |
| IPR001985 |
S-adenosylmethionine decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| Biological Process |
GO:0006597 |
spermine biosynthetic process |
|
|
| Biological Process |
GO:0008295 |
spermidine biosynthetic process |
|
|
| HMMPanther |
PTHR11570 |
S-ADENOSYLMETHIONINE |
2.6e-148 |
1-363 |
| HMMPfam |
PF01536 |
SAM_decarbox |
3.9e-129 |
13-344 |
| IPR016067 |
S-adenosylmethionine decarboxylase, core |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| Biological Process |
GO:0008295 |
spermidine biosynthetic process |
|
|
| Gene3D |
G3DSA:3.60.90.10 |
no description |
7.3e-110 |
13-344 |
| superfamily |
SSF56276 |
S-adenosylmethionine |
1.9e-125 |
20-345 |
| IPR018166 |
S-adenosylmethionine decarboxylase, conserved site |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| PatternScan |
PS01336 |
ADOMETDC |
NA |
72-82 |
| IPR018167 |
S-adenosylmethionine decarboxylase subgroup |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| HMMPIR |
PIRSF001355 |
S-adenosylmethionine |
1.1e-166 |
1-353 |
| HMMTigr |
TIGR00535 |
SAM_DCase: |
7.6e-141 |
17-344 |
| no_ID |
|
| HMMPanther |
PTHR11570:SF0 |
SUBFAMILY |
2.6e-148 |
1-363 |
| Seg |
seg |
seg |
NA |
105-117 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 13739592 | 13742106 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00037.1 |
maker |
exon |
1005927 |
1007544 |
. |
- |
. |
ID=Zjn_sc00037.1.g01820.1.cf.mkhc:exon:3 |
| Zjn_sc00037.1 |
maker |
exon |
1007644 |
1007796 |
. |
- |
. |
ID=Zjn_sc00037.1.g01820.1.cf.mkhc:exon:2 |
| Zjn_sc00037.1 |
maker |
exon |
1008219 |
1008441 |
. |
- |
. |
ID=Zjn_sc00037.1.g01820.1.cf.mkhc:exon:1 |