Z. japonica Nagirizaki
Zjn_sc00037.1.g01480.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G53450.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
145 |
3e-64 |
130.3 |
71.5 |
78.8 |
| Subject |
215 |
58 |
205 |
|
| Annot |
| Symbols: | Putative lysine decarboxylase family protein | chr3:19812977-19815430 REVERSE LENGTH=215 |
| NR |
ref|XP_004969036.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
165 |
3e-84 |
147.9 |
95.8 |
98.2 |
| Subject |
244 |
79 |
244 |
|
| Annot |
PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG [Setaria italica] |
| IRGSP |
Os01t0588900-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
165 |
1e-82 |
146.7 |
90.9 |
95.2 |
| Subject |
242 |
80 |
242 |
|
| Annot |
|
| Sbicolor |
Sobic.003G202200.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
165 |
2e-86 |
152.1 |
95.8 |
98.8 |
| Subject |
251 |
81 |
251 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00037.1.g01480.1.sm.mkhc |
length: 165 aa. |
| IPR005269 |
Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03641 |
Lysine_decarbox |
2.3e-46 |
1-130 |
| HMMTigr |
TIGR00730 |
TIGR00730: |
2.8e-41 |
1-134 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.450 |
no description |
2.8e-61 |
1-147 |
| HMMPanther |
PTHR31223 |
FAMILY |
2.9e-80 |
1-164 |
| superfamily |
SSF102405 |
MoCo |
1.3e-46 |
1-135 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 10812928 | 10816573 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00037.1 |
maker |
exon |
817817 |
817872 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:1 |
| Zjn_sc00037.1 |
maker |
exon |
818330 |
818427 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:2 |
| Zjn_sc00037.1 |
maker |
exon |
818994 |
819024 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:3 |
| Zjn_sc00037.1 |
maker |
exon |
819618 |
819717 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:4 |
| Zjn_sc00037.1 |
maker |
exon |
819812 |
819882 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:5 |
| Zjn_sc00037.1 |
maker |
exon |
820676 |
820819 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:6 |
| Zjn_sc00037.1 |
maker |
exon |
820934 |
821268 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:7 |
| Zjn_sc00037.1 |
maker |
exon |
821290 |
821462 |
. |
+ |
. |
ID=Zjn_sc00037.1.g01480.1.sm.mkhc:exon:8 |