Z. japonica Nagirizaki
Zjn_sc00036.1.g00820.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G14920.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 10 346 e-107 93.8 33.3 42.6
Subject 533 199 533
Annot | Symbols: GAI, RGA2 | GRAS family transcription factor family protein | chr1:5149414-5151015 FORWARD LENGTH=533
NR ref|XP_004969307.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 11 367 e-166 83.3 56.3 58.8
Subject 473 107 472
Annot PREDICTED: DELLA protein DWARF8-like [Setaria italica]
IRGSP Os01t0646300-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 1 343 e-164 87.1 52.1 55.5
Subject 495 109 450
Annot
Sbicolor Sobic.003G237200.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 11 367 e-159 119 56.3 57.9
Subject 676 296 675
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00036.1.g00820.1.am.mk length: 568 aa.
IPR005202 Transcription factor GRAS
method AccNumber shortName E-value location
HMMPfam PF03514 GRAS 1.9e-118 10-342
ProfileScan PS50985 GRAS 59.806 1-322
no_ID  
HMMPanther PTHR31636 FAMILY 1.3e-150 8-346
Seg seg seg NA 2-14
34-46
Pseudomolecule
Chromosome Start End Strand
51241185312417529-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00036.1 maker_non_over exon 383961 385059 . + . ID=Zjn_sc00036.1.g00820.1.am.mk:exon:1
Zjn_sc00036.1 maker_non_over exon 385750 385812 . + . ID=Zjn_sc00036.1.g00820.1.am.mk:exon:2
Zjn_sc00036.1 maker_non_over exon 386010 386240 . + . ID=Zjn_sc00036.1.g00820.1.am.mk:exon:3
Zjn_sc00036.1 maker_non_over exon 388597 388710 . + . ID=Zjn_sc00036.1.g00820.1.am.mk:exon:4
Zjn_sc00036.1 maker_non_over exon 389438 389637 . + . ID=Zjn_sc00036.1.g00820.1.am.mk:exon:5

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