Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00036.1.g00290.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00036.1)

BLAST

TAIR10	AT3G54700.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	654	108	613	e-177	81.8	47.4	59
		Subject	535	3	514
		Annot	\| Symbols: PHT1;7 \| phosphate transporter 1;7 \| chr3:20248463-20250070 REVERSE LENGTH=535
NR	ref\|NP_001105776.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	654	104	654	0.0	84.7	70	75.4
		Subject	554	2	554
		Annot	inorganic phosphate transporter 6 [Zea mays] gi\|60677369\|emb\|CAH25731.1\| phosphate transporter [Zea mays] gi\|65335927\|gb\|AAY42390.1\| inorganic phosphate transporter 6 [Zea mays] gi\|221047212\|gb\|ACL98053.1\| inorganic phosphate transporter 6 [Zea mays] gi\|413950804\|gb\|AFW83453.1\| inorganic phosphate transporter 6Phosphate transporter [Zea mays]
IRGSP	Os01t0657100-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	654	105	654	0.0	84.9	67	73.1
		Subject	555	4	555
		Annot
Sbicolor	Sobic.003G243400.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	654	104	654	0.0	84.7	69.1	75.2
		Subject	554	2	554
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR005828	General substrate transporter
Zjn_sc00036.1.g00290.1.am.mk				length: 654 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016021	integral to membrane
Molecular Function	GO:0022857	transmembrane transporter activity
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF00083	Sugar_tr	5.9e-49	132-610
IPR016196	Major facilitator superfamily domain, general substrate transporter
superfamily	SSF103473	MFS	2.4e-54	100-614
IPR020846	Major facilitator superfamily domain
ProfileScan	PS50850	MFS	30.859	129-603
no_ID
Gene3D	G3DSA:1.20.1250.20	no description	8.7e-12	180-349 453-608
HMMPanther	PTHR24064	FAMILY	7.6e-209	110-652
HMMPanther	PTHR24064:SF0	SUBFAMILY	7.6e-209	110-652
Seg	seg	seg	NA	484-499 510-522 548-565 616-633

Pseudomolecule

Chromosome	Start	End	Strand
5	12684952	12687177	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00036.1	maker_non_over	exon	114313	114359	.	+	.	ID=Zjn_sc00036.1.g00290.1.am.mk:exon:1
Zjn_sc00036.1	maker_non_over	exon	114528	115913	.	+	.	ID=Zjn_sc00036.1.g00290.1.am.mk:exon:2
Zjn_sc00036.1	maker_non_over	exon	116007	116538	.	+	.	ID=Zjn_sc00036.1.g00290.1.am.mk:exon:3