Z. japonica Nagirizaki
Zjn_sc00035.1.g02720.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 60 1e-22 252.6 47.4 54.7
Subject 240 1 60
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR ref|XP_006656060.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 67 6e-23 257.9 56.8 66.3
Subject 245 1 74
Annot PREDICTED: MADS-box transcription factor 27-like [Oryza brachyantha]
IRGSP Os06t0347700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 67 5e-26 154.7 56.8 65.3
Subject 147 1 74
Annot
Sbicolor Sobic.007G135300.2.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 78 8e-23 95.8 53.7 66.3
Subject 91 1 83
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00035.1.g02720.1.sm.mkhc length: 95 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4e-26 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 4e-26 9-59
HMMSmart SM00432 no description 4.3e-37 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 29.170 1-61
superfamily SSF55455 SRF-like 1.4e-24 1-88
no_ID  
HMMPanther PTHR11945 MADS 2.7e-35 1-60
HMMPanther PTHR11945:SF19 MADS 2.7e-35 1-60
Pseudomolecule
Chromosome Start End Strand
1942872194292979+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00035.1 maker exon 2592140 2593412 . - . ID=Zjn_sc00035.1.g02720.1.sm.mkhc:exon:3
Zjn_sc00035.1 maker exon 2593521 2593681 . - . ID=Zjn_sc00035.1.g02720.1.sm.mkhc:exon:2
Zjn_sc00035.1 maker exon 2597433 2597900 . - . ID=Zjn_sc00035.1.g02720.1.sm.mkhc:exon:1

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