Z. japonica Nagirizaki
Zjn_sc00035.1.g00040.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G48220.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 412 55 410 e-115 92 52.2 65.5
Subject 379 21 377
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379
NR ref|XP_004956367.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 412 3 412 e-149 101.2 68.7 77.2
Subject 417 36 417
Annot PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Setaria italica]
IRGSP Os09t0255400-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 412 75 412 e-150 92.5 63.1 72.3
Subject 381 45 381
Annot
Sbicolor Sobic.007G086600.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 412 1 412 e-141 92.7 62.9 76.5
Subject 382 1 382
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00035.1.g00040.1.am.mkhc length: 412 aa.
IPR001468 Indole-3-glycerol phosphate synthase, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0004425 indole-3-glycerol-phosphate synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
PatternScan PS00614 IGPS NA 194-212
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 1.9e-82 148-410
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1e-96 140-409
IPR013798 Indole-3-glycerol phosphate synthase
Molecular Function GO:0004425 indole-3-glycerol-phosphate synthase activity    
HMMPfam PF00218 IGPS 1.2e-78 142-403
no_ID  
HMMPanther PTHR22854 TRYPTOPHAN 1.1e-145 101-402
HMMPanther PTHR22854:SF2 INDOLE-3-GLYCEROL 1.1e-145 101-402
Seg seg seg NA 3-16
277-292
Pseudomolecule
Chromosome Start End Strand
1968575446860413+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00035.1 maker exon 24706 24870 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:9
Zjn_sc00035.1 maker exon 24948 25016 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:8
Zjn_sc00035.1 maker exon 25399 25478 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:7
Zjn_sc00035.1 maker exon 25606 25684 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:6
Zjn_sc00035.1 maker exon 25974 26138 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:5
Zjn_sc00035.1 maker exon 26227 26271 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:4
Zjn_sc00035.1 maker exon 26360 26434 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:3
Zjn_sc00035.1 maker exon 26760 27164 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:2
Zjn_sc00035.1 maker exon 27339 27575 . - . ID=Zjn_sc00035.1.g00040.1.am.mkhc:exon:1

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