Z. japonica Nagirizaki
Zjn_sc00034.1.g04900.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G71520.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 181 7 112 5e-24 79 32 39.8
Subject 143 3 103
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143
NR ref|XP_004970828.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 181 1 143 1e-34 107.2 57.5 61.9
Subject 194 1 151
Annot PREDICTED: ethylene-responsive transcription factor ERF020 [Setaria italica]
IRGSP Os01t0885900-00_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 181 27 115 3e-25 130.4 39.2 40.3
Subject 236 71 164
Annot
Sbicolor Sobic.003G380900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 181 1 120 2e-31 105.5 52.5 56.9
Subject 191 2 139
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g04900.1.sm.mk length: 181 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 9.1e-09 20-31
42-58
Gene3D G3DSA:3.30.730.10 no description 4.7e-25 19-78
HMMPfam PF00847 AP2 6.8e-14 19-68
HMMSmart SM00380 DNA-binding 4.3e-29 19-83
ProfileScan PS51032 AP2_ERF 21.298 19-77
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 7.3e-19 18-80
no_ID  
HMMPanther PTHR31729 FAMILY 4.5e-20 14-112
HMMPanther PTHR31729:SF0 SUBFAMILY 4.5e-20 14-112
Seg seg seg NA 11-29
Pseudomolecule
Chromosome Start End Strand
61766382517664621+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker_non_over exon 2015034 2015180 . - . ID=Zjn_sc00034.1.g04900.1.sm.mk:exon:2
Zjn_sc00034.1 maker_non_over exon 2015432 2015830 . - . ID=Zjn_sc00034.1.g04900.1.sm.mk:exon:1

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