Z. japonica Nagirizaki
Zjn_sc00034.1.g04470.1.sm.mk ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G65470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 839 73 800 e-100 97.1 35.8 54.4
Subject 815 15 795
Annot | Symbols: FAS1, NFB2 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=815
NR ref|XP_008674703.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 839 1 838 0.0 115.4 67.1 78.1
Subject 968 6 966
Annot PREDICTED: chromatin assembly factor 1 subunit FSM-like [Zea mays] gi|414879240|tpg|DAA56371.1| TPA: hypothetical protein ZEAMMB73_573569 [Zea mays]
IRGSP Os01t0896300-00_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 839 154 838 0.0 112 58.5 67.5
Subject 940 232 938
Annot
Sbicolor Sobic.003G387600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 839 154 838 0.0 112.4 65.1 71.8
Subject 943 236 941
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g04470.1.sm.mk length: 839 aa.
IPR022043 Chromatin assembly factor 1 subunit A
method AccNumber shortName E-value location
HMMPfam PF12253 CAF1A 5.1e-24 513-589
no_ID  
Coil coil coiled-coil NA 250-364
HMMPanther PTHR15272 CHROMATIN 4.5e-121 154-834
HMMPanther PTHR15272:SF0 SUBFAMILY 4.5e-121 154-834
Seg seg seg NA 107-112
254-363
371-383
549-562
Pseudomolecule
Chromosome Start End Strand
61784281517847566+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker_non_over exon 1832089 1832267 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:11
Zjn_sc00034.1 maker_non_over exon 1832356 1832401 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:10
Zjn_sc00034.1 maker_non_over exon 1832526 1832603 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:9
Zjn_sc00034.1 maker_non_over exon 1832752 1833156 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:8
Zjn_sc00034.1 maker_non_over exon 1833630 1833761 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:7
Zjn_sc00034.1 maker_non_over exon 1833837 1833918 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:6
Zjn_sc00034.1 maker_non_over exon 1834009 1834352 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:5
Zjn_sc00034.1 maker_non_over exon 1834462 1834956 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:4
Zjn_sc00034.1 maker_non_over exon 1835371 1835497 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:3
Zjn_sc00034.1 maker_non_over exon 1835611 1835755 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:2
Zjn_sc00034.1 maker_non_over exon 1836354 1836840 . - . ID=Zjn_sc00034.1.g04470.1.sm.mk:exon:1

Top