Z. japonica Nagirizaki
Zjn_sc00034.1.g02820.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G50570.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 441 1 119 3e-18 81.4 13.6 17
Subject 359 1 148
Annot | Symbols: SPL13A, SPL13 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr5:20582555-20583791 REVERSE LENGTH=359
NR tpg|DAA56083.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 441 1 441 e-109 101.4 60.3 68.3
Subject 447 1 447
Annot TPA: squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [Zea mays]
IRGSP Os01t0922600-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 441 187 441 4e-55 70.5 35.6 39.7
Subject 311 32 311
Annot
Sbicolor Sobic.003G406600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 441 187 441 5e-79 91.4 40.8 45.8
Subject 403 137 403
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g02820.1.am.mkhc length: 441 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Gene3D G3DSA:4.10.1100.10 no description 8.6e-23 64-119
HMMPfam PF03110 SBP 1.1e-12 72-120
192-223
ProfileScan PS51141 ZF_SBP 12.639 69-146
140-221
superfamily SSF103612 SBT 8.3e-12 69-119
193-229
no_ID  
HMMPanther PTHR31251 FAMILY 2.4e-22 58-236
HMMPanther PTHR31251:SF0 SUBFAMILY 2.4e-22 58-236
Seg seg seg NA 13-32
33-62
320-326
422-435
Pseudomolecule
Chromosome Start End Strand
61855904918562106+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker exon 1117549 1118319 . - . ID=Zjn_sc00034.1.g02820.1.am.mkhc:exon:4
Zjn_sc00034.1 maker exon 1118626 1118756 . - . ID=Zjn_sc00034.1.g02820.1.am.mkhc:exon:3
Zjn_sc00034.1 maker exon 1119514 1119642 . - . ID=Zjn_sc00034.1.g02820.1.am.mkhc:exon:2
Zjn_sc00034.1 maker exon 1120158 1120606 . - . ID=Zjn_sc00034.1.g02820.1.am.mkhc:exon:1

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