Z. japonica Nagirizaki
Zjn_sc00034.1.g02800.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G22950.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 117 4 102 6e-26 187.2 50.4 65
Subject 219 3 103
Annot | Symbols: AGL19, GL19 | AGAMOUS-like 19 | chr4:12023946-12027421 REVERSE LENGTH=219
NR ref|XP_004971093.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 117 1 116 3e-46 141.9 81.2 90.6
Subject 166 1 119
Annot PREDICTED: truncated transcription factor CAULIFLOWER D-like [Setaria italica]
IRGSP Os01t0922800-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 117 1 116 1e-45 140.2 71.8 83.8
Subject 164 1 116
Annot
Sbicolor Sobic.003G406800.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 117 1 116 1e-48 139.3 79.5 88.9
Subject 163 1 116
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g02800.1.sm.mkhc length: 117 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.5e-27 4-24
24-39
39-60
HMMPfam PF00319 SRF-TF 2.3e-23 11-60
HMMSmart SM00432 no description 1.1e-32 2-61
ProfileScan PS50066 MADS_BOX_2 28.973 2-62
superfamily SSF55455 SRF-like 1.7e-28 3-95
no_ID  
HMMPanther PTHR11945 MADS 2.9e-42 4-101
HMMPanther PTHR11945:SF19 MADS 2.9e-42 4-101
Pseudomolecule
Chromosome Start End Strand
61856787218574433+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker exon 1105222 1105324 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:7
Zjn_sc00034.1 maker exon 1106019 1106543 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:6
Zjn_sc00034.1 maker exon 1107383 1107411 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:5
Zjn_sc00034.1 maker exon 1107490 1107542 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:4
Zjn_sc00034.1 maker exon 1107835 1107910 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:3
Zjn_sc00034.1 maker exon 1111496 1111683 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:2
Zjn_sc00034.1 maker exon 1111709 1111783 . - . ID=Zjn_sc00034.1.g02800.1.sm.mkhc:exon:1

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