Z. japonica Nagirizaki
Zjn_sc00034.1.g02350.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G62000.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 2 676 0.0 124.1 53.9 66
Subject 859 96 776
Annot | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859
NR ref|XP_004971147.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 674 0.0 116.9 82.4 87.7
Subject 809 59 738
Annot PREDICTED: auxin response factor 4-like isoform X1 [Setaria italica]
IRGSP Os01t0927600-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 674 0.0 116.8 76 83.2
Subject 808 58 733
Annot
Sbicolor Sobic.003G411900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 674 0.0 117.1 79.6 86.7
Subject 810 58 739
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g02350.1.sm.mkhc length: 692 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 6.4e-10 580-669
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 7.6e-21 73-174
HMMSmart SM01019 B3 1.8e-23 73-175
ProfileScan PS50863 B3 11.928 73-175
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 7.8e-32 199-280
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 11.809 634-692
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 2.6e-39 66-188
superfamily SSF101936 DNA-binding 3.6e-44 56-203
no_ID  
HMMPanther PTHR31384 FAMILY 3.6e-188 1-672
Pseudomolecule
Chromosome Start End Strand
61877271718777795+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker exon 901860 901921 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:14
Zjn_sc00034.1 maker exon 901946 902658 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:13
Zjn_sc00034.1 maker exon 903424 903526 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:12
Zjn_sc00034.1 maker exon 903853 904748 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:11
Zjn_sc00034.1 maker exon 904828 905002 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:10
Zjn_sc00034.1 maker exon 905088 905160 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:9
Zjn_sc00034.1 maker exon 905245 905364 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:8
Zjn_sc00034.1 maker exon 905517 905681 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:7
Zjn_sc00034.1 maker exon 905757 905847 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:6
Zjn_sc00034.1 maker exon 906066 906150 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:5
Zjn_sc00034.1 maker exon 906253 906417 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:4
Zjn_sc00034.1 maker exon 906524 906580 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:3
Zjn_sc00034.1 maker exon 906714 906809 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:2
Zjn_sc00034.1 maker exon 906929 906938 . - . ID=Zjn_sc00034.1.g02350.1.sm.mkhc:exon:1

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