Z. japonica Nagirizaki
Zjn_sc00034.1.g00370.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G54250.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 448 11 446 e-154 93.5 65 74.3
Subject 419 1 419
Annot | Symbols: | GHMP kinase family protein | chr3:20082468-20084688 REVERSE LENGTH=419
NR ref|XP_002452980.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 448 12 448 0.0 93.8 81.7 84.8
Subject 420 3 420
Annot hypothetical protein SORBIDRAFT_04g035950 [Sorghum bicolor] gi|241932811|gb|EES05956.1| hypothetical protein SORBIDRAFT_04g035950 [Sorghum bicolor]
IRGSP Os02t0109100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 448 12 448 0.0 94 79.9 84.2
Subject 421 4 421
Annot
Sbicolor Sobic.004G330600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 448 12 448 0.0 93.8 81.7 84.8
Subject 420 3 420
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00034.1.g00370.1.am.mkhc length: 448 aa.
IPR005935 Diphosphomevalonate decarboxylase
method AccNumber shortName E-value location
Molecular Function GO:0004163 diphosphomevalonate decarboxylase activity    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPIR PIRSF015950 Diphosphomevalonate 9.2e-129 3-434
HMMPanther PTHR10977 DIPHOSPHOMEVALONATE 9.8e-224 14-447
IPR006204 GHMP kinase N-terminal domain
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00288 GHMP_kinases_N 7.8e-06 164-222
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 7.1e-65 119-247
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 2.1e-44 18-248
no_ID  
Gene3D G3DSA:3.30.70.890 no description 6.6e-20 248-317
318-429
HMMPanther PTHR10977:SF2 DIPHOSPHOMEVALONATE 9.8e-224 14-447
Seg seg seg NA 85-96
174-185
357-363
superfamily SSF55060 GHMP 1e-43 250-444
Pseudomolecule
Chromosome Start End Strand
61952333119528296+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00034.1 maker exon 151359 151515 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:12
Zjn_sc00034.1 maker exon 151599 151722 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:11
Zjn_sc00034.1 maker exon 151922 152889 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:10
Zjn_sc00034.1 maker exon 152982 153103 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:9
Zjn_sc00034.1 maker exon 153722 153770 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:8
Zjn_sc00034.1 maker exon 153918 154012 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:7
Zjn_sc00034.1 maker exon 154195 154281 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:6
Zjn_sc00034.1 maker exon 154419 154499 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:5
Zjn_sc00034.1 maker exon 154599 154662 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:4
Zjn_sc00034.1 maker exon 154820 154883 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:3
Zjn_sc00034.1 maker exon 155170 155391 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:2
Zjn_sc00034.1 maker exon 155985 156324 . - . ID=Zjn_sc00034.1.g00370.1.am.mkhc:exon:1

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