Z. japonica Nagirizaki
Zjn_sc00033.1.g02230.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G28840.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
380 |
11 |
378 |
0.0 |
99.2 |
88.4 |
92.4 |
| Subject |
377 |
9 |
377 |
|
| Annot |
| Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377 |
| NR |
ref|XP_002467242.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
380 |
1 |
380 |
0.0 |
100 |
98.2 |
99.5 |
| Subject |
380 |
1 |
380 |
|
| Annot |
hypothetical protein SORBIDRAFT_01g021890 [Sorghum bicolor] gi|241921096|gb|EER94240.1| hypothetical protein SORBIDRAFT_01g021890 [Sorghum bicolor] |
| IRGSP |
Os10t0417600-01_chr10_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
380 |
1 |
378 |
0.0 |
99.5 |
96.3 |
97.9 |
| Subject |
378 |
1 |
378 |
|
| Annot |
|
| Sbicolor |
Sobic.001G247600.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
380 |
1 |
380 |
0.0 |
100 |
98.2 |
99.5 |
| Subject |
380 |
1 |
380 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00033.1.g02230.1.am.mkhc |
length: 380 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
1.2e-45 |
32-271 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
2.7e-58 |
31-332 |
| no_ID |
|
| HMMPanther |
PTHR10366 |
NAD |
4.2e-141 |
25-353 |
| HMMPanther |
PTHR10366:SF35 |
DTDP-GLUCOSE |
4.2e-141 |
25-353 |
| superfamily |
SSF51735 |
NAD(P)-binding |
4.2e-75 |
30-376 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 8630189 | 8633874 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00033.1 |
maker |
exon |
2372752 |
2372963 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:1 |
| Zjn_sc00033.1 |
maker |
exon |
2373980 |
2374396 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:2 |
| Zjn_sc00033.1 |
maker |
exon |
2374779 |
2374872 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:3 |
| Zjn_sc00033.1 |
maker |
exon |
2374950 |
2375079 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:4 |
| Zjn_sc00033.1 |
maker |
exon |
2375205 |
2375337 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:5 |
| Zjn_sc00033.1 |
maker |
exon |
2375441 |
2375648 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:6 |
| Zjn_sc00033.1 |
maker |
exon |
2375895 |
2376437 |
. |
+ |
. |
ID=Zjn_sc00033.1.g02230.1.am.mkhc:exon:7 |