Z. japonica Nagirizaki
Zjn_sc00031.1.g02890.1.sm.mkhc ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G63960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 586 1 303 e-159 186.9 43.7 48.1
Subject 1095 252 554
Annot | Symbols: EMB2780 | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095
NR ref|XP_004978893.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 586 1 345 e-172 188.6 51.5 53.4
Subject 1105 260 596
Annot PREDICTED: DNA polymerase delta catalytic subunit [Setaria italica]
IRGSP Os11t0186400-00_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 586 1 345 e-174 188.6 51.2 53.8
Subject 1105 260 596
Annot
Sbicolor Sobic.005G066900.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 586 1 345 e-174 187.5 51.2 53.6
Subject 1099 254 590
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00031.1.g02890.1.sm.mkhc length: 586 aa.
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
method AccNumber shortName E-value location
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF03104 DNA_pol_B_exo1 2.4e-64 1-222
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 7.1e-24 330-441
442-541
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
FPrintScan PR00106 DNAPOLB 5.8e-05 346-358
407-415
HMMSmart SM00486 DNA 1.3e-97 53-421
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 3.4e-84 1-300
IPR017964 DNA-directed DNA polymerase, family B, conserved site
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
PatternScan PS00116 DNA_POLYMERASE_B NA 409-417
IPR023211 DNA polymerase, palm domain
Gene3D G3DSA:3.90.1600.10 no description 4.8e-05 357-436
IPR025687 C4-type zinc-finger of DNA polymerase delta
HMMPfam PF14260 zf-C4pol 1.3e-07 534-566
no_ID  
Gene3D G3DSA:1.10.287.690 no description 0.00019 335-356
Gene3D G3DSA:3.30.420.10 no description 2.3e-79 56-272
HMMPanther PTHR10322 DNA 0 1-586
HMMPanther PTHR10322:SF11 DNA 0 1-586
superfamily SSF56672 DNA/RNA 5.8e-60 328-532
Pseudomolecule
Chromosome Start End Strand
1013679101383992-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00031.1 maker exon 1367910 1367973 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:20
Zjn_sc00031.1 maker exon 1368110 1368197 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:19
Zjn_sc00031.1 maker exon 1368570 1368609 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:18
Zjn_sc00031.1 maker exon 1368689 1368778 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:17
Zjn_sc00031.1 maker exon 1368851 1368925 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:16
Zjn_sc00031.1 maker exon 1369024 1369095 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:15
Zjn_sc00031.1 maker exon 1378648 1378761 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:14
Zjn_sc00031.1 maker exon 1379216 1379295 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:13
Zjn_sc00031.1 maker exon 1379401 1379488 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:12
Zjn_sc00031.1 maker exon 1379580 1379636 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:11
Zjn_sc00031.1 maker exon 1379901 1379996 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:10
Zjn_sc00031.1 maker exon 1381137 1381256 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:9
Zjn_sc00031.1 maker exon 1381889 1381975 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:8
Zjn_sc00031.1 maker exon 1382317 1382388 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:7
Zjn_sc00031.1 maker exon 1382504 1382570 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:6
Zjn_sc00031.1 maker exon 1382750 1382841 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:5
Zjn_sc00031.1 maker exon 1382939 1383016 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:4
Zjn_sc00031.1 maker exon 1383267 1383404 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:3
Zjn_sc00031.1 maker exon 1383503 1383638 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:2
Zjn_sc00031.1 maker exon 1383723 1383992 . - . ID=Zjn_sc00031.1.g02890.1.sm.mkhc:exon:1

Top