Z. japonica Nagirizaki
Zjn_sc00031.1.g01000.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G74040.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
404 |
1 |
403 |
e-169 |
156.2 |
71 |
84.9 |
| Subject |
631 |
215 |
627 |
|
| Annot |
| Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631 |
| NR |
ref|XP_002448963.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
404 |
1 |
404 |
0.0 |
153.5 |
94.8 |
97.3 |
| Subject |
620 |
204 |
616 |
|
| Annot |
hypothetical protein SORBIDRAFT_05g002540 [Sorghum bicolor] gi|241934806|gb|EES07951.1| hypothetical protein SORBIDRAFT_05g002540 [Sorghum bicolor] |
| IRGSP |
Os12t0138900-02_chr12_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
404 |
1 |
398 |
0.0 |
157.2 |
91.1 |
94.6 |
| Subject |
635 |
220 |
625 |
|
| Annot |
|
| Sbicolor |
Sobic.005G030100.1.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
404 |
1 |
404 |
0.0 |
153.5 |
94.8 |
97.3 |
| Subject |
620 |
204 |
616 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00031.1.g01000.1.sm.mkhc |
length: 404 aa. |
| IPR000891 |
Pyruvate carboxyltransferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| HMMPfam |
PF00682 |
HMGL-like |
2e-38 |
1-128 |
| ProfileScan |
PS50991 |
PYR_CT |
34.574 |
1-145 |
| IPR013709 |
2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain |
| Molecular Function |
GO:0003852 |
2-isopropylmalate synthase activity |
|
|
| Biological Process |
GO:0009098 |
leucine biosynthetic process |
|
|
| HMMPfam |
PF08502 |
LeuA_dimer |
4.1e-28 |
251-385 |
| HMMSmart |
SM00917 |
LeuA |
1.4e-26 |
250-386 |
| superfamily |
SSF110921 |
2-isopropylmalate |
1.3e-14 |
264-386 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
2e-92 |
1-228 |
| no_ID |
|
| HMMPanther |
PTHR10277 |
HOMOCITRATE |
1e-183 |
1-388 |
| HMMPanther |
PTHR10277:SF9 |
2-ISOPROPYLMALATE |
1e-183 |
1-388 |
| Seg |
seg |
seg |
NA |
84-100 |
| superfamily |
SSF51569 |
Aldolase |
2.1e-49 |
1-169 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 10 | 503496 | 507826 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00031.1 |
maker |
exon |
503496 |
503592 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:1 |
| Zjn_sc00031.1 |
maker |
exon |
503778 |
503991 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:2 |
| Zjn_sc00031.1 |
maker |
exon |
504087 |
504257 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:3 |
| Zjn_sc00031.1 |
maker |
exon |
504363 |
504449 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:4 |
| Zjn_sc00031.1 |
maker |
exon |
504661 |
504761 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:5 |
| Zjn_sc00031.1 |
maker |
exon |
505789 |
505822 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:6 |
| Zjn_sc00031.1 |
maker |
exon |
505927 |
506001 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:7 |
| Zjn_sc00031.1 |
maker |
exon |
506239 |
506295 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:8 |
| Zjn_sc00031.1 |
maker |
exon |
506413 |
506547 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:9 |
| Zjn_sc00031.1 |
maker |
exon |
506979 |
507124 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:10 |
| Zjn_sc00031.1 |
maker |
exon |
507220 |
507826 |
. |
+ |
. |
ID=Zjn_sc00031.1.g01000.1.sm.mkhc:exon:11 |