Z. japonica Nagirizaki
Zjn_sc00031.1.g00210.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G58560.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
178 |
83 |
140 |
1e-11 |
172.5 |
18 |
23.6 |
| Subject |
307 |
250 |
307 |
|
| Annot |
| Symbols: | Phosphatidate cytidylyltransferase family protein | chr5:23670513-23672570 FORWARD LENGTH=307 |
| NR |
ref|NP_001140612.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
178 |
83 |
154 |
2e-26 |
108.4 |
33.1 |
36.5 |
| Subject |
193 |
105 |
176 |
|
| Annot |
uncharacterized protein LOC100272684 [Zea mays] gi|194700180|gb|ACF84174.1| unknown [Zea mays] gi|413924618|gb|AFW64550.1| hypothetical protein ZEAMMB73_110888 [Zea mays] |
| IRGSP |
Os12t0105500-01_chr12_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
178 |
83 |
156 |
3e-28 |
152.2 |
30.9 |
35.4 |
| Subject |
271 |
183 |
256 |
|
| Annot |
|
| Sbicolor |
Sobic.008G004100.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
178 |
83 |
154 |
6e-29 |
98.3 |
33.1 |
36.5 |
| Subject |
175 |
86 |
157 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00031.1.g00210.1.am.mkhc |
length: 178 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR32523 |
FAMILY |
1.9e-40 |
1-156 |
| HMMPanther |
PTHR32523:SF1 |
SUBFAMILY |
1.9e-40 |
1-156 |
| Seg |
seg |
seg |
NA |
7-25 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 10 | 100828 | 103015 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00031.1 |
maker |
exon |
100828 |
101642 |
. |
- |
. |
ID=Zjn_sc00031.1.g00210.1.am.mkhc:exon:3 |
| Zjn_sc00031.1 |
maker |
exon |
102281 |
102354 |
. |
- |
. |
ID=Zjn_sc00031.1.g00210.1.am.mkhc:exon:2 |
| Zjn_sc00031.1 |
maker |
exon |
102845 |
103015 |
. |
- |
. |
ID=Zjn_sc00031.1.g00210.1.am.mkhc:exon:1 |