Z. japonica Nagirizaki
Zjn_sc00030.1.g02750.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G04790.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
16 |
265 |
6e-99 |
92.3 |
60.9 |
71.2 |
| Subject |
276 |
20 |
271 |
|
| Annot |
| Symbols: | Ribose 5-phosphate isomerase, type A protein | chr3:1313365-1314195 FORWARD LENGTH=276 |
| NR |
ref|NP_001151138.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
1 |
266 |
e-124 |
91.6 |
80.3 |
83.6 |
| Subject |
274 |
1 |
270 |
|
| Annot |
LOC100284771 [Zea mays] gi|195634641|gb|ACG36789.1| ribose-5-phosphate isomerase [Zea mays] gi|195635347|gb|ACG37142.1| ribose-5-phosphate isomerase [Zea mays] gi|195641308|gb|ACG40122.1| ribose-5-phosphate isomerase [Zea mays] gi|195644532|gb|ACG41734.1| ribose-5-phosphate isomerase [Zea mays] gi|224030977|gb|ACN34564.1| unknown [Zea mays] gi|414883731|tpg|DAA59745.1| TPA: Ribose-5-phosphate isomerase [Zea mays] |
| IRGSP |
Os07t0176900-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
1 |
266 |
e-126 |
93.6 |
80.3 |
83.9 |
| Subject |
280 |
1 |
276 |
|
| Annot |
|
| Sbicolor |
Sobic.002G051100.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
1 |
266 |
e-127 |
102 |
81.3 |
83.3 |
| Subject |
305 |
1 |
271 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00030.1.g02750.1.sm.mkhc |
length: 299 aa. |
| IPR004788 |
Ribose 5-phosphate isomerase, type A |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004751 |
ribose-5-phosphate isomerase activity |
|
|
| Biological Process |
GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
|
|
| HMMPanther |
PTHR11934 |
RIBOSE-5-PHOSPHATE |
1.4e-115 |
6-271 |
| HMMPfam |
PF06026 |
Rib_5-P_isom_A |
1.3e-63 |
92-265 |
| HMMTigr |
TIGR00021 |
rpiA: |
2e-76 |
47-265 |
| IPR020672 |
Ribose-5-phosphate isomerase, type A, subgroup |
| Molecular Function |
GO:0004751 |
ribose-5-phosphate isomerase activity |
|
|
| Biological Process |
GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
|
|
| HAMAP |
MF_00170 |
Rib_5P_isom_A |
29.796 |
44-268 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.70.260 |
no description |
1.6e-19 |
187-248 |
| Gene3D |
G3DSA:3.40.50.1360 |
no description |
6.1e-55 |
46-186 |
| HMMPanther |
PTHR11934:SF0 |
SUBFAMILY |
1.4e-115 |
6-271 |
| Seg |
seg |
seg |
NA |
9-41 |
| superfamily |
SSF100950 |
NagB/RpiA/CoA |
1.6e-40 |
42-221 |
| superfamily |
SSF75445 |
D-ribose-5-phosphate |
5.3e-20 |
174-248 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 4 | 455177 | 457817 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00030.1 |
maker |
exon |
2327612 |
2328119 |
. |
+ |
. |
ID=Zjn_sc00030.1.g02750.1.sm.mkhc:exon:1 |
| Zjn_sc00030.1 |
maker |
exon |
2329141 |
2329323 |
. |
+ |
. |
ID=Zjn_sc00030.1.g02750.1.sm.mkhc:exon:2 |
| Zjn_sc00030.1 |
maker |
exon |
2329336 |
2329560 |
. |
+ |
. |
ID=Zjn_sc00030.1.g02750.1.sm.mkhc:exon:3 |
| Zjn_sc00030.1 |
maker |
exon |
2330151 |
2330252 |
. |
+ |
. |
ID=Zjn_sc00030.1.g02750.1.sm.mkhc:exon:4 |