Z. japonica Nagirizaki
Zjn_sc00030.1.g02490.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02610.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 41 283 6e-99 96.8 61.6 74.3
Subject 275 13 273
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:1147662-1149217 FORWARD LENGTH=275
NR ref|XP_002459431.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 6 284 e-119 112.7 84.5 90.8
Subject 320 25 320
Annot hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor] gi|241922808|gb|EER95952.1| hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor]
IRGSP Os07t0182100-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 2 284 e-114 115.8 78.9 87.7
Subject 329 32 329
Annot
Sbicolor Sobic.002G054700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 6 284 e-122 112.7 84.5 90.8
Subject 320 25 320
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g02490.1.sm.mkhc length: 284 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HAMAP MF_00131 Trp_synth_alpha 29.770 51-282
HMMPfam PF00290 Trp_syntA 7.7e-78 45-281
HMMTigr TIGR00262 trpA: 2.8e-75 45-280
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 2.6e-73 38-261
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.7e-82 40-281
IPR018204 Tryptophan synthase, alpha chain, active site
Molecular Function GO:0004834 tryptophan synthase activity    
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 85-98
no_ID  
HMMPanther PTHR10314 SER/THR 3.2e-64 21-187
HMMPanther PTHR10314:SF4 TRYTOPHAN 3.2e-64 21-187
Seg seg seg NA 17-39
166-177
266-280
Pseudomolecule
Chromosome Start End Strand
4631920635742-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker exon 2149687 2149845 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:1
Zjn_sc00030.1 maker exon 2150713 2150850 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:2
Zjn_sc00030.1 maker exon 2150956 2151085 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:3
Zjn_sc00030.1 maker exon 2151398 2151474 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:4
Zjn_sc00030.1 maker exon 2151804 2151881 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:5
Zjn_sc00030.1 maker exon 2152411 2152488 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:6
Zjn_sc00030.1 maker exon 2152603 2152662 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:7
Zjn_sc00030.1 maker exon 2152768 2153509 . + . ID=Zjn_sc00030.1.g02490.1.sm.mkhc:exon:8

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