Z. japonica Nagirizaki
Zjn_sc00030.1.g02450.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02610.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 357 96 356 e-116 77 53.5 64.7
Subject 275 13 273
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:1147662-1149217 FORWARD LENGTH=275
NR ref|XP_002459431.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 357 29 357 e-142 89.6 78.4 83.5
Subject 320 1 320
Annot hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor] gi|241922808|gb|EER95952.1| hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor]
IRGSP Os07t0182100-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 357 59 357 e-135 92.2 70 76.5
Subject 329 34 329
Annot
Sbicolor Sobic.002G054700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 357 29 357 e-145 89.6 78.4 83.5
Subject 320 1 320
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g02450.1.am.mkhc length: 357 aa.
IPR002028 Tryptophan synthase, alpha chain
method AccNumber shortName E-value location
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
HAMAP MF_00131 Trp_synth_alpha 36.814 106-355
HMMPfam PF00290 Trp_syntA 8.6e-96 100-355
HMMTigr TIGR00262 trpA: 1.1e-91 100-353
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 2.7e-87 93-357
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 4.5e-101 96-356
IPR018204 Tryptophan synthase, alpha chain, active site
Molecular Function GO:0004834 tryptophan synthase activity    
PatternScan PS00167 TRP_SYNTHASE_ALPHA NA 140-153
no_ID  
Coil coil coiled-coil NA 277-298
HMMPanther PTHR10314 SER/THR 3.5e-86 46-260
HMMPanther PTHR10314:SF4 TRYTOPHAN 3.5e-86 46-260
Seg seg seg NA 27-70
72-90
239-250
339-353
Pseudomolecule
Chromosome Start End Strand
4642855648833-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker exon 2136596 2136645 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:1
Zjn_sc00030.1 maker exon 2136694 2136967 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:2
Zjn_sc00030.1 maker exon 2137658 2137804 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:3
Zjn_sc00030.1 maker exon 2137930 2138104 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:4
Zjn_sc00030.1 maker exon 2138375 2138451 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:5
Zjn_sc00030.1 maker exon 2138780 2138857 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:6
Zjn_sc00030.1 maker exon 2139393 2139470 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:7
Zjn_sc00030.1 maker exon 2139587 2139646 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:8
Zjn_sc00030.1 maker exon 2139751 2142574 . + . ID=Zjn_sc00030.1.g02450.1.am.mkhc:exon:9

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