Z. japonica Nagirizaki
Zjn_sc00030.1.g01890.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G15560.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 783 120 780 0.0 91.6 62.6 72.2
Subject 717 56 716
Annot | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717
NR ref|NP_001059086.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 783 111 782 0.0 91.1 78.8 83.1
Subject 713 41 712
Annot Os07g0190000 [Oryza sativa Japonica Group] gi|75225072|sp|Q6YU51.1|DXS2_ORYSJ RecName: Full=Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; Short=1-deoxyxylulose-5-phosphate synthase; Short=DXP synthase; Short=DXPS; Flags: Precursor gi|34394179|dbj|BAC84616.1| putative 1-deoxyxylulose 5-phosphate synthase [Oryza sativa Japonica Group] gi|50509413|dbj|BAD31023.1| putative 1-deoxyxylulose 5-phosphate synthase [Oryza sativa Japonica Group] gi|113610622|dbj|BAF21000.1| Os07g0190000 [Oryza sativa Japonica Group] gi|215704796|dbj|BAG94824.1| unnamed protein product [Oryza sativa Japonica Group] gi|222636586|gb|EEE66718.1| hypothetical protein OsJ_23394 [Oryza sativa Japonica Group]
IRGSP Os07t0190000-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 783 111 782 0.0 91.1 78.8 83.1
Subject 713 41 712
Annot
Sbicolor Sobic.002G064500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 783 100 783 0.0 93.2 80.3 84.3
Subject 730 29 730
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g01890.1.am.mk length: 783 aa.
IPR005474 Transketolase, N-terminal
method AccNumber shortName E-value location
PatternScan PS00801 TRANSKETOLASE_1 NA 166-185
IPR005475 Transketolase-like, pyrimidine-binding domain
HMMPfam PF02779 Transket_pyr 6.9e-41 463-624
HMMSmart SM00861 Transketolase, 4.4e-66 463-628
IPR005476 Transketolase, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF02780 Transketolase_C 1.3e-29 642-765
IPR005477 Deoxyxylulose-5-phosphate synthase
Molecular Function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity    
Biological Process GO:0016114 terpenoid biosynthetic process    
HAMAP MF_00315 DXP_synth 42.370 140-774
HMMPfam PF13292 DXP_synthase_N 2.1e-109 141-426
HMMTigr TIGR00204 dxs: 9.4e-230 143-772
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF52922 TK 3.8e-36 636-774
IPR015941 Transketolase-like, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.50.920 no description 8.1e-33 643-772
IPR020826 Transketolase binding site
PatternScan PS00802 TRANSKETOLASE_2 NA 569-585
no_ID  
Gene3D G3DSA:3.40.50.970 no description 2.4e-35 383-476
477-642
HMMPanther PTHR11624 DEHYDROGENASE 0 144-783
HMMPanther PTHR11624:SF20 1-DEOXYXYLULOSE-5-PHOSPHATE 0 144-783
Seg seg seg NA 1-16
157-168
superfamily SSF52518 Thiamin 1.6e-62 138-525
459-652
Pseudomolecule
Chromosome Start End Strand
410619481064650+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker_non_over exon 1720779 1720925 . - . ID=Zjn_sc00030.1.g01890.1.am.mk:exon:4
Zjn_sc00030.1 maker_non_over exon 1721041 1722777 . - . ID=Zjn_sc00030.1.g01890.1.am.mk:exon:3
Zjn_sc00030.1 maker_non_over exon 1722919 1723280 . - . ID=Zjn_sc00030.1.g01890.1.am.mk:exon:2
Zjn_sc00030.1 maker_non_over exon 1723376 1723481 . - . ID=Zjn_sc00030.1.g01890.1.am.mk:exon:1

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