Z. japonica Nagirizaki
Zjn_sc00030.1.g01610.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 477 180 317 1e-31 45.7 14.5 18
Subject 218 84 209
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_002459509.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 477 2 320 4e-66 70.9 38.2 45.3
Subject 338 18 335
Annot hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor] gi|241922886|gb|EER96030.1| hypothetical protein SORBIDRAFT_02g005840 [Sorghum bicolor]
IRGSP Os03t0860100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 477 154 320 6e-33 47.2 17 21.4
Subject 225 64 209
Annot
Sbicolor Sobic.002G069400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 477 2 320 4e-69 70.9 38.2 45.3
Subject 338 18 335
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g01610.1.am.mk length: 477 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 9.1e-06 178-189
201-217
Gene3D G3DSA:3.30.730.10 no description 2.5e-23 180-235
HMMPfam PF00847 AP2 5.5e-13 182-227
HMMSmart SM00380 DNA-binding 2.5e-27 177-241
ProfileScan PS51032 AP2_ERF 20.047 177-235
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 3.3e-21 176-238
no_ID  
HMMPanther PTHR31190 FAMILY 6.5e-16 180-261
HMMPanther PTHR31190:SF0 SUBFAMILY 6.5e-16 180-261
Seg seg seg NA 39-72
103-128
169-184
213-222
245-257
446-460
Pseudomolecule
Chromosome Start End Strand
412078901213402-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker_non_over exon 1572027 1572999 . + . ID=Zjn_sc00030.1.g01610.1.am.mk:exon:1
Zjn_sc00030.1 maker_non_over exon 1575799 1576006 . + . ID=Zjn_sc00030.1.g01610.1.am.mk:exon:2
Zjn_sc00030.1 maker_non_over exon 1577287 1577539 . + . ID=Zjn_sc00030.1.g01610.1.am.mk:exon:3

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