Z. japonica Nagirizaki
Zjn_sc00030.1.g01280.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G05170.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1098 20 1098 0.0 97 78 85.4
Subject 1065 5 1065
Annot | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065
NR ref|NP_001059162.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1098 25 1098 0.0 98.5 95 96
Subject 1081 9 1081
Annot Os07g0208500 [Oryza sativa Japonica Group] gi|75149238|sp|Q84ZN6.1|CESA8_ORYSJ RecName: Full=Probable cellulose synthase A catalytic subunit 8 [UDP-forming]; AltName: Full=OsCesA8 gi|28411807|dbj|BAC57282.1| cellulose synthase-4 [Oryza sativa Japonica Group] gi|50509108|dbj|BAD30175.1| cellulose synthase-4 [Oryza sativa Japonica Group] gi|113610698|dbj|BAF21076.1| Os07g0208500 [Oryza sativa Japonica Group] gi|125599508|gb|EAZ39084.1| hypothetical protein OsJ_23516 [Oryza sativa Japonica Group] gi|215701511|dbj|BAG92935.1| unnamed protein product [Oryza sativa Japonica Group]
IRGSP Os07t0208500-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1098 25 1098 0.0 98.5 95 96
Subject 1081 9 1081
Annot
Sbicolor Sobic.002G075500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1098 20 1098 0.0 98.5 95.4 96.4
Subject 1081 3 1081
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g01280.1.sm.mkhc length: 1098 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 371-1092
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.6e-27 25-103
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 2.5e-34 32-101
no_ID  
HMMPanther PTHR13301 X-BOX 0 15-1098
HMMPanther PTHR13301:SF21 CELLULOSE 0 15-1098
Seg seg seg NA 2-21
99-108
666-705
908-921
994-1008
superfamily SSF53448 Nucleotide-diphospho-sugar 9.3e-08 371-877
superfamily SSF57850 RING/U-box 4.5e-35 17-112
Pseudomolecule
Chromosome Start End Strand
415301881535242-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker exon 1250187 1250261 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:1
Zjn_sc00030.1 maker exon 1250299 1250488 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:2
Zjn_sc00030.1 maker exon 1250829 1251079 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:3
Zjn_sc00030.1 maker exon 1251155 1251254 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:4
Zjn_sc00030.1 maker exon 1251350 1251539 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:5
Zjn_sc00030.1 maker exon 1251667 1251933 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:6
Zjn_sc00030.1 maker exon 1252026 1252371 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:7
Zjn_sc00030.1 maker exon 1252460 1252597 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:8
Zjn_sc00030.1 maker exon 1252684 1252809 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:9
Zjn_sc00030.1 maker exon 1252896 1253108 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:10
Zjn_sc00030.1 maker exon 1253212 1253473 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:11
Zjn_sc00030.1 maker exon 1253577 1253779 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:12
Zjn_sc00030.1 maker exon 1253988 1254338 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:13
Zjn_sc00030.1 maker exon 1254420 1255241 . + . ID=Zjn_sc00030.1.g01280.1.sm.mkhc:exon:14

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