Z. japonica Nagirizaki
Zjn_sc00030.1.g00610.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G36920.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 101 259 5e-43 166.8 40.9 45.6
Subject 432 57 246
Annot | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432
NR ref|NP_001051709.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 55 259 3e-62 172.2 54.8 58.7
Subject 446 1 214
Annot Os03g0818800 [Oryza sativa Japonica Group] gi|255675007|dbj|BAF13623.2| Os03g0818800 [Oryza sativa Japonica Group]
IRGSP Os07t0235800-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 55 259 1e-60 177.2 58.7 62.2
Subject 459 24 260
Annot
Sbicolor Sobic.002G083600.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 259 53 259 9e-62 208.1 58.7 63.7
Subject 539 72 319
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g00610.1.am.mkhc length: 259 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00847 AP2 0.00036 162-182
HMMSmart SM00380 DNA-binding 4e-07 163-206
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.4e-08 162-203
no_ID  
HMMPanther PTHR32467 FAMILY 1.2e-72 124-259
HMMPanther PTHR32467:SF0 SUBFAMILY 1.2e-72 124-259
Seg seg seg NA 5-28
34-47
63-83
139-162
Pseudomolecule
Chromosome Start End Strand
421063392109977+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker exon 675452 675548 . - . ID=Zjn_sc00030.1.g00610.1.am.mkhc:exon:5
Zjn_sc00030.1 maker exon 676357 676461 . - . ID=Zjn_sc00030.1.g00610.1.am.mkhc:exon:4
Zjn_sc00030.1 maker exon 676757 678000 . - . ID=Zjn_sc00030.1.g00610.1.am.mkhc:exon:3
Zjn_sc00030.1 maker exon 678083 678170 . - . ID=Zjn_sc00030.1.g00610.1.am.mkhc:exon:2
Zjn_sc00030.1 maker exon 678549 679090 . - . ID=Zjn_sc00030.1.g00610.1.am.mkhc:exon:1

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