Z. japonica Nagirizaki
Zjn_sc00030.1.g00120.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G64740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1107 1 1106 0.0 97.9 70.6 82.2
Subject 1084 1 1083
Annot | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084
NR ref|XP_003557327.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1107 1 1107 0.0 98.1 89.6 93.7
Subject 1086 1 1086
Annot PREDICTED: probable cellulose synthase A catalytic subunit 6 [UDP-forming] [Brachypodium distachyon]
IRGSP Os07t0252400-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1107 1 1107 0.0 98.6 91.3 93.9
Subject 1092 1 1092
Annot
Sbicolor Sobic.002G094600.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1107 1 1107 0.0 99.4 92.7 94.5
Subject 1100 1 1100
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00030.1.g00120.1.sm.mkhc length: 1107 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.683 43-89
IPR005150 Cellulose synthase
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 378-1099
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.5e-27 37-134
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 1e-28 42-98
no_ID  
Coil coil coiled-coil NA 476-497
HMMPanther PTHR13301 X-BOX 0 16-1106
HMMPanther PTHR13301:SF21 CELLULOSE 0 16-1106
Seg seg seg NA 21-37
121-136
676-714
767-777
1002-1014
superfamily SSF53448 Nucleotide-diphospho-sugar 2.8e-07 377-861
superfamily SSF57850 RING/U-box 2.6e-30 25-138
Pseudomolecule
Chromosome Start End Strand
426590182664341+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00030.1 maker exon 121088 122189 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:12
Zjn_sc00030.1 maker exon 122272 122622 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:11
Zjn_sc00030.1 maker exon 122713 122909 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:10
Zjn_sc00030.1 maker exon 123017 123305 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:9
Zjn_sc00030.1 maker exon 123410 123607 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:8
Zjn_sc00030.1 maker exon 123705 123830 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:7
Zjn_sc00030.1 maker exon 123943 124080 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:6
Zjn_sc00030.1 maker exon 124164 124509 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:5
Zjn_sc00030.1 maker exon 124597 124863 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:4
Zjn_sc00030.1 maker exon 125429 125594 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:3
Zjn_sc00030.1 maker exon 125702 126019 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:2
Zjn_sc00030.1 maker exon 126069 126411 . - . ID=Zjn_sc00030.1.g00120.1.sm.mkhc:exon:1

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