Z. japonica Nagirizaki
Zjn_sc00029.1.g06070.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18780.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 890 162 890 0.0 110.7 68.2 75.7
Subject 985 254 985
Annot | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose synthase family protein | chr4:10312846-10316719 REVERSE LENGTH=985
NR gb|EAZ13547.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 890 1 890 0.0 105.4 87 91.5
Subject 938 1 938
Annot hypothetical protein OsJ_03463 [Oryza sativa Japonica Group]
IRGSP Os01t0750300-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 890 160 890 0.0 111.1 77.2 80.2
Subject 989 256 989
Annot
Sbicolor Sobic.003G296400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 890 160 890 0.0 110.1 77 80
Subject 980 247 980
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g06070.1.sm.mkhc length: 890 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 171-882
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.7e-05 2-57
no_ID  
Coil coil coiled-coil NA 269-290
HMMPanther PTHR13301 X-BOX 0 162-890
HMMPanther PTHR13301:SF21 CELLULOSE 0 162-890
Seg seg seg NA 9-32
128-147
470-488
superfamily SSF53448 Nucleotide-diphospho-sugar 4e-09 170-669
superfamily SSF57850 RING/U-box 6.6e-08 1-75
Pseudomolecule
Chromosome Start End Strand
61434180414346307+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker exon 2697415 2697580 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:1
Zjn_sc00029.1 maker exon 2697694 2697803 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:2
Zjn_sc00029.1 maker exon 2697923 2697974 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:3
Zjn_sc00029.1 maker exon 2698065 2698212 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:4
Zjn_sc00029.1 maker exon 2698877 2699219 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:5
Zjn_sc00029.1 maker exon 2699310 2699447 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:6
Zjn_sc00029.1 maker exon 2699747 2699872 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:7
Zjn_sc00029.1 maker exon 2699968 2700180 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:8
Zjn_sc00029.1 maker exon 2700256 2700493 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:9
Zjn_sc00029.1 maker exon 2700602 2700801 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:10
Zjn_sc00029.1 maker exon 2700890 2701243 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:11
Zjn_sc00029.1 maker exon 2701323 2701918 . + . ID=Zjn_sc00029.1.g06070.1.sm.mkhc:exon:12

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