Z. japonica Nagirizaki
Zjn_sc00029.1.g05650.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT4G32810.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
83 |
569 |
0.0 |
99.7 |
54.7 |
68 |
| Subject |
570 |
75 |
570 |
|
| Annot |
| Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570 |
| NR |
ref|XP_012701670.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
4 |
572 |
0.0 |
100.9 |
82.9 |
87.2 |
| Subject |
577 |
7 |
577 |
|
| Annot |
PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic [Setaria italica] |
| IRGSP |
Os01t0746400-00_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
1 |
572 |
0.0 |
99.5 |
80.8 |
86 |
| Subject |
569 |
6 |
568 |
|
| Annot |
|
| Sbicolor |
Sobic.003G293600.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
3 |
571 |
0.0 |
101.2 |
80.8 |
86.2 |
| Subject |
579 |
6 |
577 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00029.1.g05650.1.am.mk |
length: 572 aa. |
| IPR004294 |
Carotenoid oxygenase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10543 |
BETA-CAROTENE |
3e-218 |
21-572 |
| HMMPfam |
PF03055 |
RPE65 |
5.2e-87 |
129-567 |
| no_ID |
|
| HMMPanther |
PTHR10543:SF6 |
BETA-CAROTENE |
3e-218 |
21-572 |
| Seg |
seg |
seg |
NA |
49-87 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 14173730 | 14177124 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2529341 |
2529495 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:8 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2529601 |
2529893 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:7 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2529998 |
2530206 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:6 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2530274 |
2530816 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:5 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2530841 |
2530882 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:4 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2530925 |
2531017 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:3 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2531612 |
2531652 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:2 |
| Zjn_sc00029.1 |
maker_non_over |
exon |
2532393 |
2532735 |
. |
- |
. |
ID=Zjn_sc00029.1.g05650.1.am.mk:exon:1 |