Z. japonica Nagirizaki
Zjn_sc00029.1.g05640.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G32810.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 677 62 519 e-147 84.2 36.8 49
Subject 570 82 568
Annot | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570
NR ref|XP_012701490.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 677 3 524 0.0 81.7 53 60
Subject 553 2 549
Annot PREDICTED: carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like [Setaria italica]
IRGSP Os01t0566500-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 677 50 519 0.0 81.5 48.2 56.9
Subject 552 56 548
Annot
Sbicolor Sobic.005G105700.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 677 3 519 e-174 78 47.4 57
Subject 528 2 525
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g05640.1.am.mk length: 677 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 8.4e-177 1-542
HMMPfam PF03055 RPE65 3.1e-80 62-519
no_ID  
HMMPanther PTHR10543:SF6 BETA-CAROTENE 8.4e-177 1-542
Seg seg seg NA 43-54
470-487
599-616
Pseudomolecule
Chromosome Start End Strand
61416739714173147-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker_non_over exon 2523008 2523370 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:8
Zjn_sc00029.1 maker_non_over exon 2525381 2525488 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:7
Zjn_sc00029.1 maker_non_over exon 2526749 2526891 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:6
Zjn_sc00029.1 maker_non_over exon 2526982 2527274 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:5
Zjn_sc00029.1 maker_non_over exon 2527382 2527575 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:4
Zjn_sc00029.1 maker_non_over exon 2527663 2528260 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:3
Zjn_sc00029.1 maker_non_over exon 2528318 2528399 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:2
Zjn_sc00029.1 maker_non_over exon 2528506 2528758 . - . ID=Zjn_sc00029.1.g05640.1.am.mk:exon:1

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