Z. japonica Nagirizaki
Zjn_sc00029.1.g05630.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G32810.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 49 523 e-178 74.5 38.3 47.8
Subject 570 71 563
Annot | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570
NR ref|XP_004969931.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 1 523 0.0 73.2 55.7 60.8
Subject 560 1 540
Annot PREDICTED: carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like [Setaria italica]
IRGSP Os01t0566500-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 54 523 0.0 72.2 49.8 55.7
Subject 552 56 543
Annot
Sbicolor Sobic.005G105700.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 1 523 0.0 69 46 54.2
Subject 528 1 520
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g05630.1.am.mk length: 765 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 7.3e-220 1-523
HMMPfam PF03055 RPE65 1.1e-92 63-523
no_ID  
HMMPanther PTHR10543:SF6 BETA-CAROTENE 7.3e-220 1-523
Seg seg seg NA 33-44
661-682
695-712
727-758
Pseudomolecule
Chromosome Start End Strand
61415276614158088-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker_non_over exon 2508377 2509017 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:8
Zjn_sc00029.1 maker_non_over exon 2509603 2509689 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:7
Zjn_sc00029.1 maker_non_over exon 2511715 2511837 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:6
Zjn_sc00029.1 maker_non_over exon 2511955 2512247 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:5
Zjn_sc00029.1 maker_non_over exon 2512328 2512521 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:4
Zjn_sc00029.1 maker_non_over exon 2512598 2513206 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:3
Zjn_sc00029.1 maker_non_over exon 2513249 2513341 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:2
Zjn_sc00029.1 maker_non_over exon 2513442 2513699 . - . ID=Zjn_sc00029.1.g05630.1.am.mk:exon:1

Top