Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00029.1.g04240.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00029.1)

BLAST

TAIR10	AT1G74320.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	361	21	361	e-137	97	61.2	75.3
		Subject	350	16	346
		Annot	\| Symbols: \| Protein kinase superfamily protein \| chr1:27941192-27942903 FORWARD LENGTH=350
NR	ref\|XP_004969755.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	361	1	361	0.0	101.9	90	93.9
		Subject	368	1	368
		Annot	PREDICTED: probable choline kinase 2 isoform X2 [Setaria italica]
IRGSP	Os01t0717000-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	361	1	361	e-176	101.9	85.3	90.9
		Subject	368	1	368
		Annot
Sbicolor	Sobic.003G277700.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	361	1	361	e-177	102.2	87.5	92.2
		Subject	369	1	369
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011009	Protein kinase-like domain
Zjn_sc00029.1.g04240.1.sm.mkhc				length: 361 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups
superfamily	SSF56112	Protein	6.9e-102	2-358
IPR026712	Choline/Ethanolamine kinase
Molecular Function	GO:0016301	kinase activity
Biological Process	GO:0046474	glycerophospholipid biosynthetic process
HMMPanther	PTHR22603	CHOLINE/ETHANOALAMINE	8.3e-130	20-360
no_ID
Coil	coil	coiled-coil	NA	189-210
Gene3D	G3DSA:3.10.450.110	no description	1.8e-16	29-120
Gene3D	G3DSA:3.90.1200.10	no description	4.7e-89	121-358
HMMPfam	PF01633	Choline_kinase	5.6e-70	83-283
Seg	seg	seg	NA	29-46 71-80

Pseudomolecule

Chromosome	Start	End	Strand
6	13523179	13527079	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00029.1	maker	exon	1878790	1878885	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:7
Zjn_sc00029.1	maker	exon	1879001	1879101	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:6
Zjn_sc00029.1	maker	exon	1879495	1879542	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:5
Zjn_sc00029.1	maker	exon	1879663	1879780	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:4
Zjn_sc00029.1	maker	exon	1880539	1880734	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:3
Zjn_sc00029.1	maker	exon	1880857	1880978	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:2
Zjn_sc00029.1	maker	exon	1882286	1882690	.	-	.	ID=Zjn_sc00029.1.g04240.1.sm.mkhc:exon:1