Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00029.1.g03730.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00029.1)

BLAST

TAIR10	AT1G51760.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	5	306	3e-83	143.8	53.6	69
		Subject	440	138	440
		Annot	\| Symbols: IAR3, JR3 \| peptidase M20/M25/M40 family protein \| chr1:19199562-19201424 FORWARD LENGTH=440
NR	ref\|XP_004969701.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	5	306	e-121	149.7	75.2	81.7
		Subject	458	155	458
		Annot	PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Setaria italica]
IRGSP	Os01t0706900-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	8	306	e-112	149	70.3	78.8
		Subject	456	157	456
		Annot
Sbicolor	Sobic.003G273000.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	25	306	e-121	146.1	72.2	80.1
		Subject	447	165	447
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002933	Peptidase M20
Zjn_sc00029.1.g03730.1.sm.mkhc				length: 306 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0016787	hydrolase activity
HMMPfam	PF01546	Peptidase_M20	1.1e-16	25-286
IPR011650	Peptidase M20, dimerisation domain
Gene3D	G3DSA:3.30.70.360	no description	7.4e-38	79-196
HMMPfam	PF07687	M20_dimer	9.9e-05	84-178
superfamily	SSF55031	Bacterial	2.1e-29	80-191
IPR017439	Amidohydrolase
Molecular Function	GO:0016787	hydrolase activity
HMMTigr	TIGR01891	amidohydrolases:	2.7e-59	23-277
no_ID
Gene3D	G3DSA:3.40.630.10	no description	5.4e-41	197-292
HMMPanther	PTHR32404	FAMILY	4.2e-85	6-304
HMMPanther	PTHR32404:SF0	SUBFAMILY	4.2e-85	6-304
Seg	seg	seg	NA	105-120 210-222
superfamily	SSF53187	Zn-dependent	1.5e-31	25-290

Pseudomolecule

Chromosome	Start	End	Strand
6	13300121	13301390	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00029.1	maker	exon	1655732	1656406	.	-	.	ID=Zjn_sc00029.1.g03730.1.sm.mkhc:exon:3
Zjn_sc00029.1	maker	exon	1656516	1656830	.	-	.	ID=Zjn_sc00029.1.g03730.1.sm.mkhc:exon:2
Zjn_sc00029.1	maker	exon	1656930	1657001	.	-	.	ID=Zjn_sc00029.1.g03730.1.sm.mkhc:exon:1