Z. japonica Nagirizaki
Zjn_sc00029.1.g03600.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G47770.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
337 |
5 |
337 |
e-141 |
113.9 |
68.8 |
84 |
| Subject |
384 |
37 |
384 |
|
| Annot |
| Symbols: FPS1 | farnesyl diphosphate synthase 1 | chr5:19345297-19347415 FORWARD LENGTH=384 |
| NR |
ref|XP_006644578.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
337 |
2 |
337 |
e-178 |
104.7 |
89.3 |
95.5 |
| Subject |
353 |
3 |
353 |
|
| Annot |
PREDICTED: farnesyl pyrophosphate synthase-like [Oryza brachyantha] |
| IRGSP |
Os01t0703400-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
337 |
1 |
337 |
e-178 |
104.7 |
88.7 |
95.5 |
| Subject |
353 |
1 |
353 |
|
| Annot |
|
| Sbicolor |
Sobic.003G270500.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
337 |
1 |
337 |
e-180 |
105.6 |
91.1 |
96.4 |
| Subject |
356 |
1 |
356 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00029.1.g03600.1.sm.mkhc |
length: 337 aa. |
| IPR000092 |
Polyprenyl synthetase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0008299 |
isoprenoid biosynthetic process |
|
|
| HMMPfam |
PF00348 |
polyprenyl_synt |
5.5e-63 |
44-299 |
| PatternScan |
PS00723 |
POLYPRENYL_SYNTHASE_1 |
NA |
100-114 |
| IPR008949 |
Terpenoid synthase |
| Gene3D |
G3DSA:1.10.600.10 |
no description |
1.2e-95 |
13-336 |
| superfamily |
SSF48576 |
Terpenoid |
5.6e-81 |
7-337 |
| no_ID |
|
| HMMPanther |
PTHR11525 |
FARNESYL-PYROPHOSPHATE |
5.8e-179 |
1-337 |
| HMMPanther |
PTHR11525:SF0 |
SUBFAMILY |
5.8e-179 |
1-337 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 13241148 | 13245095 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00029.1 |
maker |
exon |
1596759 |
1597026 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:1 |
| Zjn_sc00029.1 |
maker |
exon |
1598111 |
1598251 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:2 |
| Zjn_sc00029.1 |
maker |
exon |
1598364 |
1598450 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:3 |
| Zjn_sc00029.1 |
maker |
exon |
1598784 |
1598900 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:4 |
| Zjn_sc00029.1 |
maker |
exon |
1598988 |
1599076 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:5 |
| Zjn_sc00029.1 |
maker |
exon |
1599243 |
1599294 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:6 |
| Zjn_sc00029.1 |
maker |
exon |
1599396 |
1599491 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:7 |
| Zjn_sc00029.1 |
maker |
exon |
1599716 |
1599805 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:8 |
| Zjn_sc00029.1 |
maker |
exon |
1599879 |
1599950 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:9 |
| Zjn_sc00029.1 |
maker |
exon |
1600258 |
1600706 |
. |
+ |
. |
ID=Zjn_sc00029.1.g03600.1.sm.mkhc:exon:10 |