Z. japonica Nagirizaki
Zjn_sc00029.1.g02370.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G53460.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1194 695 958 e-129 184.9 18.7 20.4
Subject 2208 1101 1367
Annot | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208
NR ref|XP_004969556.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1194 1 346 e-162 181.2 25 26.5
Subject 2163 1 378
Annot PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Setaria italica]
IRGSP Os01t0682001-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1194 1 346 e-141 46.6 22.8 25.1
Subject 557 1 382
Annot
Sbicolor Sobic.003G258800.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1194 1 346 e-156 181.2 25 26.6
Subject 2163 1 378
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g02370.1.am.mkhc length: 1194 aa.
IPR000583 Class II glutamine amidotransferase domain
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
HMMPfam PF00310 GATase_2 9.6e-06 98-310
347-380
IPR002932 Glutamate synthase, central-C
Biological Process GO:0006537 glutamate biosynthetic process    
Molecular Function GO:0015930 glutamate synthase activity    
Molecular Function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF01645 Glu_synthase 2.5e-91 712-909
IPR006982 Glutamate synthase, central-N
Biological Process GO:0006807 nitrogen compound metabolic process    
Molecular Function GO:0015930 glutamate synthase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF04898 Glu_syn_central 5.3e-74 402-592
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 8.6e-115 400-591
592-637
695-950
IPR017932 Glutamine amidotransferase type 2 domain
ProfileScan PS51278 GATASE_TYPE_2 11.034 98-1194
no_ID  
Coil coil coiled-coil NA 533-554
670-691
FPrintScan PR00419 ADXRDTASE 9.5e-13 957-979
980-993
Gene3D G3DSA:3.50.50.60 no description 1.9e-42 955-1176
Gene3D G3DSA:3.60.20.10 no description 5.8e-16 98-310
347-395
HMMPanther PTHR11938 FAD 0 83-958
HMMPanther PTHR11938:SF1 GLUTAMATE 0 83-958
HMMPfam PF13450 NAD_binding_8 6.8e-08 960-994
Seg seg seg NA 16-33
246-259
378-392
570-581
754-767
superfamily SSF51395 FMN-linked 4.1e-164 399-952
superfamily SSF51905 FAD/NAD(P)-binding 1e-40 955-1173
superfamily SSF56235 N-terminal 4.6e-96 98-395
Pseudomolecule
Chromosome Start End Strand
61270172212713420-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker exon 1057333 1057646 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:19
Zjn_sc00029.1 maker exon 1057671 1057993 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:18
Zjn_sc00029.1 maker exon 1058082 1058336 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:17
Zjn_sc00029.1 maker exon 1058970 1059177 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:16
Zjn_sc00029.1 maker exon 1061311 1061951 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:15
Zjn_sc00029.1 maker exon 1062210 1062283 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:14
Zjn_sc00029.1 maker exon 1062582 1062647 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:13
Zjn_sc00029.1 maker exon 1064306 1064611 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:12
Zjn_sc00029.1 maker exon 1064915 1065001 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:11
Zjn_sc00029.1 maker exon 1065207 1065676 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:10
Zjn_sc00029.1 maker exon 1065754 1065790 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:9
Zjn_sc00029.1 maker exon 1066115 1066258 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:8
Zjn_sc00029.1 maker exon 1066611 1066714 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:7
Zjn_sc00029.1 maker exon 1067546 1067650 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:6
Zjn_sc00029.1 maker exon 1067856 1067956 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:5
Zjn_sc00029.1 maker exon 1068038 1068190 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:4
Zjn_sc00029.1 maker exon 1068294 1068407 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:3
Zjn_sc00029.1 maker exon 1068482 1068601 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:2
Zjn_sc00029.1 maker exon 1068690 1069031 . - . ID=Zjn_sc00029.1.g02370.1.am.mkhc:exon:1

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