Z. japonica Nagirizaki
Zjn_sc00029.1.g01930.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G29080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 8 235 6e-48 124 47.6 60.6
Subject 305 9 281
Annot | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
NR ref|XP_004969523.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 227 3e-83 109.3 75.6 80.5
Subject 269 1 237
Annot PREDICTED: auxin-responsive protein IAA5-like [Setaria italica]
IRGSP Os01t0675700-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 227 1e-79 110.2 72.8 76.8
Subject 271 1 239
Annot
Sbicolor Sobic.003G254800.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 227 1e-76 112.6 76.4 80.1
Subject 277 1 245
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g01930.1.sm.mkhc length: 246 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 5.5e-53 36-228
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 25.377 140-242
no_ID  
HMMPanther PTHR31734 FAMILY 8.1e-88 1-227
Seg seg seg NA 14-32
63-77
85-108
superfamily SSF54277 CAD 1.9e-15 127-246
Pseudomolecule
Chromosome Start End Strand
61255708912560154+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker exon 912700 913007 . + . ID=Zjn_sc00029.1.g01930.1.sm.mkhc:exon:1
Zjn_sc00029.1 maker exon 913101 913330 . + . ID=Zjn_sc00029.1.g01930.1.sm.mkhc:exon:2
Zjn_sc00029.1 maker exon 913874 914015 . + . ID=Zjn_sc00029.1.g01930.1.sm.mkhc:exon:3
Zjn_sc00029.1 maker exon 915313 915765 . + . ID=Zjn_sc00029.1.g01930.1.sm.mkhc:exon:4

Top