Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00029.1.g01870.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00029.1)

BLAST

TAIR10	AT1G27600.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	356	122	284	5e-14	110.7	16	20.5
		Subject	394	63	197
		Annot	\| Symbols: IRX9-L, I9H \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr1:9604083-9605881 REVERSE LENGTH=394
NR	ref\|XP_004969521.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	356	39	284	e-104	125.3	52.8	59.8
		Subject	446	1	249
		Annot	PREDICTED: probable glucuronosyltransferase Os01g0675500 [Setaria italica]
IRGSP	Os01t0675500-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	356	39	284	3e-97	125.3	50.3	58.4
		Subject	446	1	249
		Annot
Sbicolor	Sobic.003G254700.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	356	39	284	e-103	125.8	52	59.3
		Subject	448	1	251
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR005027	Glycosyl transferase, family 43
Zjn_sc00029.1.g01870.1.am.mkhc				length: 356 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
Cellular Component	GO:0016020	membrane
HMMPanther	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN	3.2e-58	100-315
HMMPfam	PF03360	Glyco_transf_43	8.2e-05	300-329
no_ID
Gene3D	G3DSA:3.90.550.10	no description	8.1e-09	227-284 296-350
HMMPanther	PTHR10896:SF1	BETA-1,3-GLUCURONYLTRANSFERASE	3.2e-58	100-315
superfamily	SSF53448	Nucleotide-diphospho-sugar	1.4e-25	227-351

Pseudomolecule

Chromosome	Start	End	Strand
6	12536177	12540439	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00029.1	maker	exon	891788	893019	.	-	.	ID=Zjn_sc00029.1.g01870.1.am.mkhc:exon:4
Zjn_sc00029.1	maker	exon	893673	893721	.	-	.	ID=Zjn_sc00029.1.g01870.1.am.mkhc:exon:3
Zjn_sc00029.1	maker	exon	894943	895735	.	-	.	ID=Zjn_sc00029.1.g01870.1.am.mkhc:exon:2
Zjn_sc00029.1	maker	exon	895993	896050	.	-	.	ID=Zjn_sc00029.1.g01870.1.am.mkhc:exon:1