Z. japonica Nagirizaki
Zjn_sc00029.1.g00370.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G53240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 340 e-158 99.7 80.4 88.6
Subject 341 2 340
Annot | Symbols: mMDH1 | Lactate/malate dehydrogenase family protein | chr1:19854966-19856802 REVERSE LENGTH=341
NR ref|XP_004969321.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 342 0.0 99.4 94.7 98.5
Subject 340 1 340
Annot PREDICTED: malate dehydrogenase, mitochondrial-like [Setaria italica]
IRGSP Os01t0649100-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 341 0.0 99.4 92.4 97.4
Subject 340 1 340
Annot
Sbicolor Sobic.003G238500.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 342 1 342 0.0 140.9 93.3 97.4
Subject 482 143 482
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00029.1.g00370.1.sm.mkhc length: 342 aa.
IPR001236 Lactate/malate dehydrogenase, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00056 Ldh_1_N 2.1e-48 30-172
IPR001252 Malate dehydrogenase, active site
Biological Process GO:0006108 malate metabolic process    
Molecular Function GO:0016615 malate dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00068 MDH NA 173-185
IPR001557 L-lactate/malate dehydrogenase
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0044262 cellular carbohydrate metabolic process    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000102 L-lactate/malate 4.8e-56 28-338
HMMPanther PTHR11540 MALATE 1.5e-206 1-342
IPR010097 Malate dehydrogenase, type 1
Biological Process GO:0006108 malate metabolic process    
Molecular Function GO:0030060 L-malate dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11540:SF1 MALATE 1.5e-206 1-342
HMMTigr TIGR01772 MDH_euk_gproteo: 3.4e-125 30-340
IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.90.110.10 no description 5.6e-64 174-340
superfamily SSF56327 LDH 8.2e-46 173-341
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 2.6e-61 30-173
IPR022383 Lactate/malate dehydrogenase, C-terminal
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02866 Ldh_1_C 2.5e-44 174-338
no_ID  
Seg seg seg NA 14-24
191-201
317-329
superfamily SSF51735 NAD(P)-binding 3.8e-43 29-173
Pseudomolecule
Chromosome Start End Strand
61181397311816729+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00029.1 maker exon 169584 169997 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:1
Zjn_sc00029.1 maker exon 170548 170716 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:2
Zjn_sc00029.1 maker exon 170817 170878 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:3
Zjn_sc00029.1 maker exon 171260 171384 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:4
Zjn_sc00029.1 maker exon 171490 171607 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:5
Zjn_sc00029.1 maker exon 171937 172241 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:6
Zjn_sc00029.1 maker exon 172267 172340 . + . ID=Zjn_sc00029.1.g00370.1.sm.mkhc:exon:7

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