Z. japonica Nagirizaki
Zjn_sc00028.1.g04470.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G05580.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 434 23 425 e-154 100.2 60.1 71.9
Subject 435 23 432
Annot | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435
NR ref|XP_004978426.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 434 71 424 e-177 93.3 72.8 76.3
Subject 405 29 391
Annot PREDICTED: omega-3 fatty acid desaturase, endoplasmic reticulum-like [Setaria italica]
IRGSP Os12t0104400-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 434 57 434 e-176 88.7 71.4 77.6
Subject 385 1 385
Annot
Sbicolor Sobic.008G003200.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 434 57 424 e-174 98.8 73 77.2
Subject 429 23 414
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00028.1.g04470.1.am.mk length: 434 aa.
IPR005804 Fatty acid desaturase, type 1
method AccNumber shortName E-value location
Biological Process GO:0006629 lipid metabolic process    
HMMPfam PF00487 FA_desaturase 2e-37 135-381
IPR021863 Protein of unknown function DUF3474
Molecular Function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF11960 DUF3474 3.4e-26 64-126
no_ID  
HMMPanther PTHR32100 FAMILY 6.6e-229 49-433
HMMPanther PTHR32100:SF0 SUBFAMILY 6.6e-229 49-433
Seg seg seg NA 29-36
45-54
56-66
115-138
231-240
Pseudomolecule
Chromosome Start End Strand
159420597161-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00028.1 maker_non_over exon 2707911 2708386 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:1
Zjn_sc00028.1 maker_non_over exon 2708505 2708594 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:2
Zjn_sc00028.1 maker_non_over exon 2709180 2709246 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:3
Zjn_sc00028.1 maker_non_over exon 2709796 2709888 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:4
Zjn_sc00028.1 maker_non_over exon 2710001 2710165 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:5
Zjn_sc00028.1 maker_non_over exon 2710268 2710345 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:6
Zjn_sc00028.1 maker_non_over exon 2710456 2710593 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:7
Zjn_sc00028.1 maker_non_over exon 2710670 2710867 . + . ID=Zjn_sc00028.1.g04470.1.am.mk:exon:8

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