Z. japonica Nagirizaki
Zjn_sc00028.1.g03420.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G21060.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
340 |
1 |
337 |
e-121 |
110.6 |
64.1 |
77.4 |
| Subject |
376 |
39 |
376 |
|
| Annot |
| Symbols: | Glyceraldehyde-3-phosphate dehydrogenase-like family protein | chr5:7149153-7152745 REVERSE LENGTH=376 |
| NR |
ref|XP_004978470.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
340 |
1 |
340 |
e-168 |
112.9 |
86.8 |
94.1 |
| Subject |
384 |
44 |
384 |
|
| Annot |
PREDICTED: homoserine dehydrogenase-like [Setaria italica] |
| IRGSP |
Os12t0125400-01_chr12_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
340 |
1 |
340 |
e-168 |
112.9 |
85.3 |
92.9 |
| Subject |
384 |
44 |
384 |
|
| Annot |
|
| Sbicolor |
Sobic.008G019500.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
340 |
1 |
340 |
e-169 |
112.9 |
86.5 |
92.6 |
| Subject |
384 |
44 |
384 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00028.1.g03420.1.sm.mkhc |
length: 340 aa. |
| IPR001342 |
Homoserine dehydrogenase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006520 |
cellular amino acid metabolic process |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF00742 |
Homoserine_dh |
6e-52 |
132-330 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
7e-36 |
2-153 |
| IPR019811 |
Homoserine dehydrogenase, conserved site |
| Biological Process |
GO:0006520 |
cellular amino acid metabolic process |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| PatternScan |
PS01042 |
HOMOSER_DHGENASE |
NA |
178-200 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.360.10 |
no description |
1.5e-51 |
154-312 |
| HMMPanther |
PTHR21499 |
ASPARTATE |
6.9e-191 |
1-340 |
| HMMPanther |
PTHR21499:SF16 |
SUBFAMILY |
6.9e-191 |
1-340 |
| Seg |
seg |
seg |
NA |
313-324 |
| superfamily |
SSF51735 |
NAD(P)-binding |
6.3e-13 |
60-154 |
| superfamily |
SSF55347 |
Glyceraldehyde-3-phosphate |
5.9e-44 |
132-317 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 15 | 554712 | 558576 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00028.1 |
maker |
exon |
2246496 |
2246625 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:1 |
| Zjn_sc00028.1 |
maker |
exon |
2246792 |
2246869 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:2 |
| Zjn_sc00028.1 |
maker |
exon |
2247003 |
2247118 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:3 |
| Zjn_sc00028.1 |
maker |
exon |
2247237 |
2247290 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:4 |
| Zjn_sc00028.1 |
maker |
exon |
2247650 |
2247737 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:5 |
| Zjn_sc00028.1 |
maker |
exon |
2247834 |
2247926 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:6 |
| Zjn_sc00028.1 |
maker |
exon |
2248234 |
2248274 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:7 |
| Zjn_sc00028.1 |
maker |
exon |
2248498 |
2248551 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:8 |
| Zjn_sc00028.1 |
maker |
exon |
2249287 |
2249450 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:9 |
| Zjn_sc00028.1 |
maker |
exon |
2249603 |
2249672 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:10 |
| Zjn_sc00028.1 |
maker |
exon |
2249956 |
2250360 |
. |
+ |
. |
ID=Zjn_sc00028.1.g03420.1.sm.mkhc:exon:11 |