Z. japonica Nagirizaki
Zjn_sc00028.1.g03110.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G01420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 551 1 551 e-174 111.1 62.8 73.3
Subject 612 21 612
Annot | Symbols: PIN4, ATPIN4 | Auxin efflux carrier family protein | chr2:180478-183199 REVERSE LENGTH=612
NR ref|XP_012703005.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 551 1 551 0.0 101.3 85.7 90.9
Subject 558 21 558
Annot PREDICTED: LOW QUALITY PROTEIN: probable auxin efflux carrier component 1b [Setaria italica]
IRGSP Os11t0137000-01_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 551 1 551 0.0 100.5 79.7 84.6
Subject 554 21 554
Annot
Sbicolor Sobic.005G025900.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 551 1 551 0.0 105.8 82.2 86.4
Subject 583 21 583
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00028.1.g03110.1.sm.mk length: 551 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 1.4e-153 1-546
IPR014024 Auxin efflux carrier, plant type
HMMTigr TIGR00946 2a69: 1e-137 2-551
no_ID  
HMMPanther PTHR31752 FAMILY 8.8e-284 1-551
HMMPanther PTHR31752:SF0 SUBFAMILY 8.8e-284 1-551
Seg seg seg NA 60-70
194-213
247-266
323-335
Pseudomolecule
Chromosome Start End Strand
15733894736290-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00028.1 maker_non_over exon 2068782 2069781 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:1
Zjn_sc00028.1 maker_non_over exon 2069829 2070096 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:2
Zjn_sc00028.1 maker_non_over exon 2070184 2070269 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:3
Zjn_sc00028.1 maker_non_over exon 2070367 2070524 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:4
Zjn_sc00028.1 maker_non_over exon 2070657 2070733 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:5
Zjn_sc00028.1 maker_non_over exon 2071112 2071178 . + . ID=Zjn_sc00028.1.g03110.1.sm.mk:exon:6

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