Z. japonica Nagirizaki
Zjn_sc00028.1.g01300.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38620.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 431 101 244 3e-71 65.4 27.6 30.6
Subject 282 1 144
Annot | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282
NR ref|XP_004977235.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 431 101 330 5e-78 58 38.3 40.6
Subject 250 1 222
Annot PREDICTED: myb-related protein Zm38-like [Setaria italica]
IRGSP Os11t0180900-00_chr11_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 431 101 316 1e-72 68.4 33.4 36.7
Subject 295 1 223
Annot
Sbicolor Sobic.005G062000.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 431 91 300 8e-72 101.2 33.2 38.1
Subject 436 113 348
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00028.1.g01300.1.am.mk length: 431 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 6.5e-15 114-161
167-211
HMMSmart SM00717 SANT 2e-16 113-163
166-214
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1e-26 105-164
165-216
superfamily SSF46689 Homeodomain-like 4.7e-27 114-213
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 17.526 162-216
109-161
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.8e-103 96-256
HMMPanther PTHR10641:SF203SUBFAMILY NOT 1.8e-103 96-256
Seg seg seg NA 232-241
295-326
349-360
390-407
Pseudomolecule
Chromosome Start End Strand
1517293681734608+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00028.1 maker_non_over exon 1070464 1070786 . - . ID=Zjn_sc00028.1.g01300.1.am.mk:exon:4
Zjn_sc00028.1 maker_non_over exon 1071949 1072358 . - . ID=Zjn_sc00028.1.g01300.1.am.mk:exon:3
Zjn_sc00028.1 maker_non_over exon 1072469 1072736 . - . ID=Zjn_sc00028.1.g01300.1.am.mk:exon:2
Zjn_sc00028.1 maker_non_over exon 1075410 1075704 . - . ID=Zjn_sc00028.1.g01300.1.am.mk:exon:1

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