Z. japonica Nagirizaki
Zjn_sc00027.1.g06720.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G64230.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
3e-81 |
100 |
93.9 |
97.3 |
| Subject |
148 |
1 |
148 |
|
| Annot |
| Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148 |
| NR |
gb|EMS65000.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
1e-80 |
146.6 |
96.6 |
98.6 |
| Subject |
217 |
70 |
217 |
|
| Annot |
Ubiquitin-conjugating enzyme E2-17 kDa [Triticum urartu] |
| IRGSP |
Os04t0667800-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
9e-83 |
100 |
96.6 |
98.6 |
| Subject |
148 |
1 |
148 |
|
| Annot |
|
| Sbicolor |
Sobic.009G174900.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
9e-83 |
100 |
98 |
98.6 |
| Subject |
148 |
1 |
148 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00027.1.g06720.1.sm.mkhc |
length: 148 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
1.7e-53 |
5-141 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
48.531 |
4-136 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
2e-81 |
1-147 |
| superfamily |
SSF54495 |
UBC-like |
7e-66 |
1-148 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
74-89 |
| no_ID |
|
| HMMPanther |
PTHR24068 |
FAMILY |
1.1e-114 |
1-147 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
8e-80 |
4-147 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 8385631 | 8389534 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00027.1 |
maker |
exon |
2790271 |
2790409 |
. |
+ |
. |
ID=Zjn_sc00027.1.g06720.1.sm.mkhc:exon:1 |
| Zjn_sc00027.1 |
maker |
exon |
2791217 |
2791295 |
. |
+ |
. |
ID=Zjn_sc00027.1.g06720.1.sm.mkhc:exon:2 |
| Zjn_sc00027.1 |
maker |
exon |
2791445 |
2791572 |
. |
+ |
. |
ID=Zjn_sc00027.1.g06720.1.sm.mkhc:exon:3 |
| Zjn_sc00027.1 |
maker |
exon |
2792340 |
2792444 |
. |
+ |
. |
ID=Zjn_sc00027.1.g06720.1.sm.mkhc:exon:4 |
| Zjn_sc00027.1 |
maker |
exon |
2792981 |
2794174 |
. |
+ |
. |
ID=Zjn_sc00027.1.g06720.1.sm.mkhc:exon:5 |