Z. japonica Nagirizaki
Zjn_sc00027.1.g04090.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G51950.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
46 |
259 |
2e-41 |
97.4 |
35.8 |
50.4 |
| Subject |
267 |
38 |
251 |
|
| Annot |
| Symbols: IAA18 | indole-3-acetic acid inducible 18 | chr1:19305670-19307130 FORWARD LENGTH=267 |
| NR |
gb|EEC79550.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
1 |
264 |
1e-81 |
119.3 |
65.7 |
74.8 |
| Subject |
327 |
1 |
321 |
|
| Annot |
hypothetical protein OsI_20673 [Oryza sativa Indica Group] |
| IRGSP |
Os05t0523300-01_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
1 |
264 |
3e-84 |
119.3 |
65.7 |
74.5 |
| Subject |
327 |
1 |
321 |
|
| Annot |
|
| Sbicolor |
Sobic.009G203700.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
3 |
274 |
5e-83 |
125.9 |
69 |
78.8 |
| Subject |
345 |
2 |
345 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00027.1.g04090.1.sm.mkhc |
length: 274 aa. |
| IPR003311 |
AUX/IAA protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02309 |
AUX_IAA |
1.3e-37 |
102-259 |
| IPR011525 |
Aux/IAA-ARF-dimerisation |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| ProfileScan |
PS50962 |
IAA_ARF |
25.698 |
153-257 |
| no_ID |
|
| HMMPanther |
PTHR31211 |
FAMILY |
1.2e-73 |
111-274 |
| HMMPanther |
PTHR31211:SF0 |
SUBFAMILY |
1.2e-73 |
111-274 |
| Seg |
seg |
seg |
NA |
45-54 |
| superfamily |
SSF54277 |
CAD |
3.6e-07 |
140-255 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 9643407 | 9647666 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00027.1 |
maker |
exon |
1532139 |
1532232 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:1 |
| Zjn_sc00027.1 |
maker |
exon |
1532749 |
1533097 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:2 |
| Zjn_sc00027.1 |
maker |
exon |
1534265 |
1534510 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:3 |
| Zjn_sc00027.1 |
maker |
exon |
1534629 |
1534776 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:4 |
| Zjn_sc00027.1 |
maker |
exon |
1535024 |
1535087 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:5 |
| Zjn_sc00027.1 |
maker |
exon |
1535240 |
1536398 |
. |
+ |
. |
ID=Zjn_sc00027.1.g04090.1.sm.mkhc:exon:6 |