Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00027.1.g03680.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00027.1)

BLAST

TAIR10	AT4G18240.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	590	51	418	2e-67	176.3	25.4	40.7
		Subject	1040	180	573
		Annot	\| Symbols: ATSS4, SSIV, SS4 \| starch synthase 4 \| chr4:10082221-10087044 FORWARD LENGTH=1040
NR	ref\|XP_004961405.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	590	7	413	e-178	154.2	52.5	59.5
		Subject	910	43	443
		Annot	PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Setaria italica]
IRGSP	Os05t0533600-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	590	7	413	e-146	155.1	43.1	54.4
		Subject	915	42	448
		Annot
Sbicolor	Sobic.009G209300.1.p\|Chr09\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	590	7	413	e-176	154.1	51.9	59.5
		Subject	909	42	442
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR013534	Starch synthase, catalytic domain
Zjn_sc00027.1.g03680.1.sm.mkhc				length: 590 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF08323	Glyco_transf_5	2.3e-17	403-489
no_ID
Coil	coil	coiled-coil	NA	77-105 207-228
Gene3D	G3DSA:3.40.50.2000	no description	2.3e-20	488-563
HMMPanther	PTHR12526	GLYCOSYLTRANSFERASE	3.2e-61	245-585
HMMPanther	PTHR12526:SF17	STARCH	3.2e-61	245-585
superfamily	SSF53756	UDP-Glycosyltransferase/glycogen	1.8e-10	487-583 409-488

Pseudomolecule

Chromosome	Start	End	Strand
18	9810904	9817047	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00027.1	maker	exon	1362758	1363474	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:9
Zjn_sc00027.1	maker	exon	1363561	1363636	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:8
Zjn_sc00027.1	maker	exon	1363725	1363786	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:7
Zjn_sc00027.1	maker	exon	1365345	1365413	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:6
Zjn_sc00027.1	maker	exon	1365511	1365702	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:5
Zjn_sc00027.1	maker	exon	1366728	1366779	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:4
Zjn_sc00027.1	maker	exon	1366897	1367842	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:3
Zjn_sc00027.1	maker	exon	1367919	1367994	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:2
Zjn_sc00027.1	maker	exon	1368417	1368901	.	-	.	ID=Zjn_sc00027.1.g03680.1.sm.mkhc:exon:1