Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00027.1.g03360.1.am.mkhc ( /TE )

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00027.1)

BLAST

TAIR10	AT5G64810.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	222	69	200	9e-36	87.4	31.5	43.2
		Subject	194	34	174
		Annot	\| Symbols: WRKY51, ATWRKY51 \| WRKY DNA-binding protein 51 \| chr5:25908415-25909687 FORWARD LENGTH=194
NR	ref\|XP_002440147.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	222	1	222	1e-72	98.6	77.9	82.4
		Subject	219	1	219
		Annot	hypothetical protein SORBIDRAFT_09g026830 [Sorghum bicolor] gi\|241945432\|gb\|EES18577.1\| hypothetical protein SORBIDRAFT_09g026830 [Sorghum bicolor]
IRGSP	Os05t0537100-00_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	222	1	222	1e-70	99.5	76.1	79.7
		Subject	221	1	221
		Annot
Sbicolor	Sobic.009G212800.1.p\|Chr09\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	222	1	222	1e-75	98.6	77.9	82.4
		Subject	219	1	219
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003657	DNA-binding WRKY
Zjn_sc00027.1.g03360.1.am.mkhc				length: 222 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0043565	sequence-specific DNA binding
Gene3D	G3DSA:2.20.25.80	no description	7.8e-33	121-195
HMMPfam	PF03106	WRKY	4.9e-29	135-193
HMMSmart	SM00774	DNA	5.7e-36	135-194
ProfileScan	PS50811	WRKY	31.686	130-195
superfamily	SSF118290	WRKY	6.3e-28	126-196
no_ID
HMMPanther	PTHR31221	FAMILY	2.3e-29	123-195
Seg	seg	seg	NA	23-63 76-104

Pseudomolecule

Chromosome	Start	End	Strand
18	9916701	9918128	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00027.1	maker	exon	1261677	1262282	.	-	.	ID=Zjn_sc00027.1.g03360.1.am.mkhc:exon:3
Zjn_sc00027.1	maker	exon	1262474	1262614	.	-	.	ID=Zjn_sc00027.1.g03360.1.am.mkhc:exon:2
Zjn_sc00027.1	maker	exon	1262709	1263104	.	-	.	ID=Zjn_sc00027.1.g03360.1.am.mkhc:exon:1