Z. japonica Nagirizaki
Zjn_sc00027.1.g01970.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G22670.4 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 280 1 247 2e-43 120.7 40 50.7
Subject 338 31 305
Annot | Symbols: IAA8 | indoleacetic acid-induced protein 8 | chr2:9636877-9638459 FORWARD LENGTH=338
NR ref|XP_004961249.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 280 3 247 1e-82 97.5 66.4 70
Subject 273 2 242
Annot PREDICTED: auxin-responsive protein IAA19-like [Setaria italica]
IRGSP Os05t0559400-03_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 280 3 247 3e-75 100.4 65.4 70.4
Subject 281 2 250
Annot
Sbicolor Sobic.009G229200.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 280 3 247 2e-73 99.6 63.2 67.5
Subject 279 2 248
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00027.1.g01970.1.sm.mkhc length: 280 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.3e-50 40-246
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 24.134 159-246
no_ID  
HMMPanther PTHR31734 FAMILY 2.3e-85 2-249
Seg seg seg NA 20-29
65-82
109-121
134-147
superfamily SSF54277 CAD 1.1e-12 146-259
Pseudomolecule
Chromosome Start End Strand
181043862310444305-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00027.1 maker exon 735500 735948 . + . ID=Zjn_sc00027.1.g01970.1.sm.mkhc:exon:1
Zjn_sc00027.1 maker exon 736607 736842 . + . ID=Zjn_sc00027.1.g01970.1.sm.mkhc:exon:2
Zjn_sc00027.1 maker exon 737698 737839 . + . ID=Zjn_sc00027.1.g01970.1.sm.mkhc:exon:3
Zjn_sc00027.1 maker exon 739043 740176 . + . ID=Zjn_sc00027.1.g01970.1.sm.mkhc:exon:4
Zjn_sc00027.1 maker exon 741096 741182 . + . ID=Zjn_sc00027.1.g01970.1.sm.mkhc:exon:5

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