Z. japonica Nagirizaki
Zjn_sc00027.1.g01270.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT4G11070.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
286 |
80 |
186 |
7e-26 |
98.3 |
19.6 |
24.5 |
| Subject |
281 |
63 |
170 |
|
| Annot |
| Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281 |
| NR |
ref|XP_012700437.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
286 |
6 |
286 |
2e-72 |
102.8 |
60.1 |
68.9 |
| Subject |
294 |
7 |
294 |
|
| Annot |
PREDICTED: probable WRKY transcription factor 30 isoform X1 [Setaria italica] |
| IRGSP |
Os05t0571200-01_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
286 |
5 |
282 |
5e-53 |
96.9 |
46.9 |
59.8 |
| Subject |
277 |
7 |
277 |
|
| Annot |
|
| Sbicolor |
Sobic.009G238200.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
286 |
1 |
286 |
5e-64 |
95.1 |
54.5 |
62.9 |
| Subject |
272 |
1 |
272 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00027.1.g01270.1.sm.mk |
length: 286 aa. |
| IPR003657 |
DNA-binding WRKY |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0043565 |
sequence-specific DNA binding |
|
|
| Gene3D |
G3DSA:2.20.25.80 |
no description |
1.4e-26 |
111-185 |
| HMMPfam |
PF03106 |
WRKY |
5e-25 |
124-184 |
| HMMSmart |
SM00774 |
DNA |
6e-40 |
124-186 |
| ProfileScan |
PS50811 |
WRKY |
21.505 |
119-183 |
| superfamily |
SSF118290 |
WRKY |
1.4e-24 |
115-188 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
10-31 |
| HMMPanther |
PTHR32096 |
FAMILY |
2.8e-15 |
103-178 |
| HMMPanther |
PTHR32096:SF4 |
SUBFAMILY |
2.8e-15 |
103-178 |
| Seg |
seg |
seg |
NA |
71-87 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 10693780 | 10694815 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00027.1 |
maker_non_over |
exon |
484990 |
485416 |
. |
- |
. |
ID=Zjn_sc00027.1.g01270.1.sm.mk:exon:3 |
| Zjn_sc00027.1 |
maker_non_over |
exon |
485525 |
485679 |
. |
- |
. |
ID=Zjn_sc00027.1.g01270.1.sm.mk:exon:2 |
| Zjn_sc00027.1 |
maker_non_over |
exon |
485747 |
486025 |
. |
- |
. |
ID=Zjn_sc00027.1.g01270.1.sm.mk:exon:1 |