Z. japonica Nagirizaki
Zjn_sc00027.1.g00370.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G63160.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 9 288 e-139 115.6 83.7 91
Subject 333 10 333
Annot | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333
NR ref|XP_004976529.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 10 288 e-151 116.7 92.7 95.1
Subject 336 14 336
Annot PREDICTED: replication factor C subunit 4 [Setaria italica]
IRGSP Os04t0569000-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 1 287 e-153 116.3 93.4 96.5
Subject 335 1 334
Annot
Sbicolor Sobic.006G183100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 10 288 e-152 115.6 92.4 94.1
Subject 333 11 333
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00027.1.g00370.1.sm.mkhc length: 288 aa.
IPR003593 AAA+ ATPase domain
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.2e-10 46-167
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 3.3e-10 50-128
IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006260 DNA replication    
superfamily SSF48019 DNA 1.7e-26 191-284
IPR013748 Replication factor C, C-terminal domain
HMMPfam PF08542 Rep_fac_C 1.3e-23 190-277
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.9e-41 12-191
no_ID  
Gene3D G3DSA:1.10.8.60 no description 8.4e-20 127-192
Gene3D G3DSA:1.20.272.10 no description 6.1e-33 193-283
Gene3D G3DSA:3.40.50.300 no description 1.2e-34 15-126
HMMPanther PTHR11669 REPLICATION 4.3e-97 4-283
Seg seg seg NA 25-36
266-275
Pseudomolecule
Chromosome Start End Strand
181099185210994600+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00027.1 maker exon 185205 185417 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:7
Zjn_sc00027.1 maker exon 185526 185720 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:6
Zjn_sc00027.1 maker exon 185821 185949 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:5
Zjn_sc00027.1 maker exon 187000 187063 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:4
Zjn_sc00027.1 maker exon 187399 187500 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:3
Zjn_sc00027.1 maker exon 187589 187695 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:2
Zjn_sc00027.1 maker exon 187795 187953 . - . ID=Zjn_sc00027.1.g00370.1.sm.mkhc:exon:1

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