Z. japonica Nagirizaki
Zjn_sc00027.1.g00080.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G10960.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
5 |
355 |
e-163 |
98.9 |
78.3 |
85.9 |
| Subject |
351 |
2 |
350 |
|
| Annot |
| Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351 |
| NR |
ref|XP_004960975.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
355 |
0.0 |
100 |
91.8 |
94.6 |
| Subject |
355 |
1 |
355 |
|
| Annot |
PREDICTED: UDP-glucose 4-epimerase 1 [Setaria italica] |
| IRGSP |
Os08t0374800-01_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
6 |
353 |
e-161 |
114.9 |
74.6 |
85.1 |
| Subject |
408 |
11 |
357 |
|
| Annot |
|
| Sbicolor |
Sobic.001G372500.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
351 |
0.0 |
100 |
91.5 |
95.2 |
| Subject |
355 |
1 |
352 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00027.1.g00080.1.sm.mkhc |
length: 355 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
9.4e-53 |
9-273 |
| IPR005886 |
UDP-glucose 4-epimerase GalE |
| Molecular Function |
GO:0003978 |
UDP-glucose 4-epimerase activity |
|
|
| Biological Process |
GO:0006012 |
galactose metabolic process |
|
|
| HMMPanther |
PTHR10366:SF39 |
UDP-GLUCOSE |
4.3e-209 |
2-355 |
| HMMTigr |
TIGR01179 |
galE: |
1.5e-131 |
9-345 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
1.9e-52 |
8-187 |
| IPR025308 |
UDP-glucose 4-epimerase C-terminal domain |
| HMMPfam |
PF13950 |
Epimerase_Csub |
4.7e-27 |
286-347 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.25.10 |
no description |
9.9e-52 |
274-349 |
| HMMPanther |
PTHR10366 |
NAD |
4.3e-209 |
2-355 |
| Seg |
seg |
seg |
NA |
312-326 |
| superfamily |
SSF51735 |
NAD(P)-binding |
2.9e-98 |
7-349 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 11113918 | 11117146 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00027.1 |
maker |
exon |
62659 |
63212 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:8 |
| Zjn_sc00027.1 |
maker |
exon |
63294 |
63385 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:7 |
| Zjn_sc00027.1 |
maker |
exon |
63505 |
63587 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:6 |
| Zjn_sc00027.1 |
maker |
exon |
63686 |
63998 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:5 |
| Zjn_sc00027.1 |
maker |
exon |
64110 |
64211 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:4 |
| Zjn_sc00027.1 |
maker |
exon |
64529 |
64664 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:3 |
| Zjn_sc00027.1 |
maker |
exon |
65033 |
65082 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:2 |
| Zjn_sc00027.1 |
maker |
exon |
65693 |
65887 |
. |
- |
. |
ID=Zjn_sc00027.1.g00080.1.sm.mkhc:exon:1 |